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Scoary2 logo (light mode) Scoary2 logo (dark mode)

Scoary2 associates orthogenes (e.g. generated using OrthoFinder or Roary to traits. It reports a list of genes sorted by strength of association per trait. The results can be explored interactively with a simple, static HTML/JS app.

Publication bioRxiv Preprint Docker Image Version (latest semver) DOI

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Paper

Please cite:

Roder, T. et al. Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomes. Genome Biol 25, 93 (2024). https://doi.org/10.1186/s13059-024-03233-7