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Try git cloning test data for windows
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vladsavelyev committed Sep 5, 2023
1 parent 93be31d commit 5cdcaff
Showing 1 changed file with 5 additions and 7 deletions.
12 changes: 5 additions & 7 deletions .github/workflows/multiqc.yml
Original file line number Diff line number Diff line change
Expand Up @@ -164,14 +164,12 @@ jobs:
- name: Install MultiQC
run: pip install .

# Fetch the MultiQC test data
# NB: Download zip file instead of git clone, as Windows complains about reserved filenames and certain characters
- name: Download test data
run: |
curl -fsSL https://github.com/ewels/MultiQC_TestData/archive/master.zip -o test_data.zip
7z x test_data.zip -y -o"test_data"
dir test_data\MultiQC_TestData-master
uses: actions/checkout@v3
with:
repository: ewels/MultiQC_TestData
path: test_data

# Run all of the tests! Remember the BACKslash path separator!
- name: All modules / Custom report filename
run: multiqc ${{ needs.changes.outputs.single_module }} --lint test_data\MultiQC_TestData-master\data\modules\ --filename full_report.html
run: multiqc ${{ needs.changes.outputs.single_module }} --lint test_data\data\modules\ --filename full_report.html

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