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DRAGEN: new module vc_hethom_ratio_metrics #1915

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DRAGEN: new module vc_hethom_ratio_metrics #1915

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365a585
Update search_patterns.yaml
Just-Roma Apr 25, 2023
d8e75b4
Update dragen.py
Just-Roma Apr 25, 2023
618d8e1
Update utils.py
Just-Roma Apr 25, 2023
096cb63
Add files via upload
Just-Roma Apr 25, 2023
95b75bd
Update vc_hethom_ratio_metrics.py
Just-Roma Apr 25, 2023
66ab407
Merge branch 'master' into DRAGEN-New-Module-Hethom-Metrics
Just-Roma May 31, 2023
8fbd8d0
Update vc_hethom_ratio_metrics.py
Just-Roma Jun 3, 2023
520b019
Restart the tests again. Py 3.7 was aborted for some reason.
Just-Roma Jun 3, 2023
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5 changes: 5 additions & 0 deletions multiqc/modules/dragen/dragen.py
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Original file line number Diff line number Diff line change
Expand Up @@ -14,12 +14,14 @@
from .sc_rna_metrics import DragenScRnaMetrics
from .time_metrics import DragenTimeMetrics
from .trimmer_metrics import DragenTrimmerMetrics
from .vc_hethom_ratio_metrics import DragenVCHetHomRatioMetrics
from .vc_metrics import DragenVCMetrics

log = logging.getLogger(__name__)


class MultiqcModule(
DragenVCHetHomRatioMetrics,
DragenMappingMetics,
DragenFragmentLength,
DragenPloidyEstimationMetrics,
Expand Down Expand Up @@ -73,6 +75,9 @@ def __init__(self):
samples_found |= self.add_ploidy_estimation_metrics()
# <output prefix>.ploidy_estimation_metrics.csv - add just Ploidy estimation into gen stats

samples_found |= self.add_vc_hethom_ratio_metrics()
# <output prefix>.vc_hethom_ratio_metrics.csv

self.collect_overall_mean_cov_data()
# <output prefix>.<coverage region prefix>_overall_mean_cov<arbitrary suffix>.csv
# This data will be used by in the DragenCoverageMetrics.
Expand Down
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