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Cellranger: fix parsing antibody tab without antibody_treemap_plot #2525

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merged 2 commits into from
May 2, 2024

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Fix parsing antibody tab in Cellranger outputs that doesn't contain 'antibody_treemap_plot' data.

Fix #2520

There are however 'antibody_histogram_plot' and 'antibody_clustering_selector' instead. We should implement some plots for that. Those actually contain ready-to-go Plotly plots with layout and config, wonder if we can use them as is.

@vladsavelyev vladsavelyev merged commit d13e73d into main May 2, 2024
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@vladsavelyev vladsavelyev deleted the fix-cellranger branch May 2, 2024 01:02
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KeyError: 'antibody_treemap_plot' in cellranger outout web_summary.html from a CITEseq experiment
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