@Multiscale-Genomics

Multiscale Genomics

Virtual Research Environment- Supporting the 3D/4D genomics community with tools to integrate navigation from sequence to 3D/4D chromatin dynamics data.

  • Python Apache-2.0 Updated Jan 18, 2019
  • VRE-tool integration

    Python 1 Updated Jan 11, 2019
  • MuG Virtual Research Environment

    JavaScript 2 Apache-2.0 Updated Jan 10, 2019
  • This library outlines the main structures related to the tools section of the VRE.

    Python 2 2 Apache-2.0 Updated Nov 27, 2018
  • Wrapper for BamQC

    Python 1 Apache-2.0 Updated Nov 20, 2018
  • Scripts required for the processing of FASTQ files (eg generating adjacency lists for Hi-C data)

    Python 1 3 Apache-2.0 Updated Nov 19, 2018
  • Example pipelines file that is ready to run in the VRE matching the code in the HowTo documentation

    Python 1 1 Apache-2.0 Updated Nov 5, 2018
  • Documentation for developers creating tools and pipelines for the MuG VRE

    Shell Apache-2.0 Updated Nov 5, 2018
  • Python Apache-2.0 Updated Oct 31, 2018
  • Miscellaneous scripts for mg-process-fastq

    Python Updated Oct 31, 2018
  • Scripts for processing bed, wig and tsv files ready for indexing for the RESTful servers.

    Python Apache-2.0 Updated Oct 31, 2018
  • Pipeline wrapping the MACS2 tool for the MuG Tool Developers API Workshop

    Python 2 Apache-2.0 Updated Sep 13, 2018
  • VRE pyDockDNA tool manager

    C++ 1 MIT Updated Aug 17, 2018
  • API for the management of file locations and users within the MuG VRE

    Python 1 Apache-2.0 Updated Aug 15, 2018
  • Common functions that are not specific to a given workflow or tool

    Python Apache-2.0 Updated Aug 2, 2018
  • Wrappers around mg Tools that have been written in Luigi so that they can be run on alternative cluster technologies to aid in benchmarking the pipelines

    Python Apache-2.0 Updated Apr 11, 2018
  • RESTful API for TADbit generated 3D coordinates

    Python Apache-2.0 Updated Dec 21, 2017
  • RESTful API providing adjacency data stored in hdf5 files that have been generated with the scripts in the mg-storage-hdf5 / mg-process-fastq repo

    Python Apache-2.0 Updated Dec 20, 2017
  • Github.io Jekyll site for the Multiscal Genomics repository

    CSS 22,940 MIT Updated Nov 23, 2017
  • Util functions common to all rest services

    Python Apache-2.0 Updated Nov 1, 2017
  • Service to monitor REST live services

    Python Apache-2.0 Updated Oct 31, 2017
  • RESTful access to the DMP

    Python Apache-2.0 Updated Oct 31, 2017
  • Data retrieval of files or sections of files

    Python Apache-2.0 Updated Oct 31, 2017
  • Simple API remotely accessing the VRE user files

    Objective-C Updated Jul 19, 2017
  • RESTful API to TAD predictions

    Python Apache-2.0 Updated Jan 26, 2017
  • The MuG Information Network visualises information flow in Multiscale Complex Genomics.

    JavaScript 1 Updated Nov 8, 2016
  • The DNA Flex Browser lets you navigate through sequence-dependent DNA flexibility data.

    JavaScript 1 Updated Nov 8, 2016
  • REST API for gene expression data generated as part of teh MuG project.

    Updated Nov 4, 2016
  • A suite of tools to predict DNA flexibility from sequence at different resolutions

    Python 1 Updated Nov 1, 2016
  • Rigid-body protein-DNA sampling

    C 2 1 Updated Sep 7, 2016