MuG Virtual Research Environment
Simple API remotely accessing the VRE user files
Repository containing pipeline and tools to analyse capture Hi-C data
This library outlines the main structures related to the tools section of the VRE.
Wrapper for BamQC
Scripts required for the processing of FASTQ files (eg generating adjacency lists for Hi-C data)
Example pipelines file that is ready to run in the VRE matching the code in the HowTo documentation
Documentation for developers creating tools and pipelines for the MuG VRE
Miscellaneous scripts for mg-process-fastq
Scripts for processing bed, wig and tsv files ready for indexing for the RESTful servers.
Pipeline wrapping the MACS2 tool for the MuG Tool Developers API Workshop
VRE pyDockDNA tool manager
API for the management of file locations and users within the MuG VRE
Common functions that are not specific to a given workflow or tool
Wrappers around mg Tools that have been written in Luigi so that they can be run on alternative cluster technologies to aid in benchmarking the pipelines
RESTful API for TADbit generated 3D coordinates
RESTful API providing adjacency data stored in hdf5 files that have been generated with the scripts in the mg-storage-hdf5 / mg-process-fastq repo
Github.io Jekyll site for the Multiscal Genomics repository
Util functions common to all rest services
Service to monitor REST live services
RESTful access to the DMP
Data retrieval of files or sections of files
RESTful API to TAD predictions
The MuG Information Network visualises information flow in Multiscale Complex Genomics.
The DNA Flex Browser lets you navigate through sequence-dependent DNA flexibility data.
REST API for gene expression data generated as part of teh MuG project.
A suite of tools to predict DNA flexibility from sequence at different resolutions