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NAL-i5K

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  1. GFF3toolkit GFF3toolkit Public

    Python programs for processing GFF3 files

    Python 94 27

  2. genomics-workspace genomics-workspace Public

    Django website project for common sequence search tools.

    JavaScript 15 5

  3. remap-gff3 remap-gff3 Public

    update gff3 coordinates to new assembly versions

    Python 7 3

  4. NAL_RNA_seq_annotation_pipeline NAL_RNA_seq_annotation_pipeline Public

    Python 5 3

  5. AgBioData_GFF3_recommendation AgBioData_GFF3_recommendation Public

    The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of mode…

    5 4

  6. Organism_Onboarding Organism_Onboarding Public

    A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline

    Common Workflow Language 4 1

Repositories

Showing 10 of 52 repositories
  • Organism_Onboarding Public

    A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline

    NAL-i5K/Organism_Onboarding’s past year of commit activity
    Common Workflow Language 4 1 4 5 Updated May 20, 2024
  • GFF3toolkit Public

    Python programs for processing GFF3 files

    NAL-i5K/GFF3toolkit’s past year of commit activity
    Python 94 27 15 1 Updated Mar 27, 2024
  • general_issues Public

    for issues and discussions not tied to a specific repository

    NAL-i5K/general_issues’s past year of commit activity
    2 0 31 0 Updated Feb 7, 2024
  • NAL_RNA_seq_annotation_pipeline Public
    NAL-i5K/NAL_RNA_seq_annotation_pipeline’s past year of commit activity
    Python 5 3 17 2 Updated Oct 31, 2023
  • ColorByType Public

    A JBrowse plugin to color the features according the feature type

    NAL-i5K/ColorByType’s past year of commit activity
    JavaScript 2 1 2 0 Updated Sep 25, 2023
  • tripal_eutils Public

    ncbi loader via the eutils interface

    NAL-i5K/tripal_eutils’s past year of commit activity
    PHP 4 GPL-3.0 3 22 2 Updated Sep 13, 2023
  • SRAtoVCF Public

    A pipeline for converting short-read DNA data from SRA into VCF files

    NAL-i5K/SRAtoVCF’s past year of commit activity
    Common Workflow Language 0 0 4 0 Updated Sep 7, 2023
  • jbrowse-plugin-linkout Public
    NAL-i5K/jbrowse-plugin-linkout’s past year of commit activity
    TypeScript 3 Apache-2.0 0 0 0 Updated Aug 29, 2023
  • Apollo Public Forked from GMOD/Apollo

    Customized version of Apollo, which is a genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    NAL-i5K/Apollo’s past year of commit activity
    Groovy 1 86 0 1 Updated Jun 1, 2023
  • tripal_elasticsearch Public Forked from tripal/tripal_elasticsearch
    NAL-i5K/tripal_elasticsearch’s past year of commit activity
    PHP 0 GPL-3.0 8 0 0 Updated Feb 27, 2023
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