NAL-i5K

learning notes from i5k-workspace

ncbi loader via the eutils interface

A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline

NAL specific customizations to the genomics workspace application

Custom css for the i5k workspace track styles.

Python programs for processing GFF3 files

Django website project for common sequence search tools.

a drupal fields module for organism display for i5k

A JBrowse plugin to color the features according the feature type

Provides an admin layer and forms for users to submit organisms and analysis into Chado

Provides a Drupal interface for linking and managing users for Apollo

update gff3 coordinates to new assembly versions

Generate statistics report (commit/insertion/deletion) of your github repos

Customized version of jbrowse used for NAL-i5k

for issues and discussions not tied to a specific repository

This repository contains scripts used for processing data for training workshop

Header and footer files for the i5k Workspace@NAL

Retrieve assembly metadata from NCBI

Used to generate test data by renaming features in an existing dataset. This can be used to generate large numbers of datasets based on real data.

Production tests for genomics-workspace.

Visualization based on the calculation result of Assembly Metrics Toolkit. (https://nal-i5k.github.io/Assembly_Metrics_Visualization/)