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learning notes from i5k-workspace
ncbi loader via the eutils interface
A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
NAL specific customizations to the genomics workspace application
Custom css for the i5k workspace track styles.
Python programs for processing GFF3 files
Django website project for common sequence search tools.
a drupal fields module for organism display for i5k
A JBrowse plugin to color the features according the feature type
Provides an admin layer and forms for users to submit organisms and analysis into Chado
Provides a Drupal interface for linking and managing users for Apollo
update gff3 coordinates to new assembly versions
Generate statistics report (commit/insertion/deletion) of your github repos
Customized version of jbrowse used for NAL-i5k
for issues and discussions not tied to a specific repository
This repository contains scripts used for processing data for training workshop
Convert your alignment files in BAM format into coverage files in bigWig format
Header and footer files for the i5k Workspace@NAL
Retrieve assembly metadata from NCBI
NCBI-BLAST web service with python backend and HTML5 frontend.
Used to generate test data by renaming features in an existing dataset. This can be used to generate large numbers of datasets based on real data.
Production tests for genomics-workspace.
Visualization based on the calculation result of Assembly Metrics Toolkit. (https://nal-i5k.github.io/Assembly_Metrics_Visualization/)