Python programs for processing GFF3 files
A JBrowse plugin to color the features according the feature type
Customized version of jbrowse used for NAL-i5k
for issues and discussions not tied to a specific repository
A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
Ancillary scripts for onboarding content at the i5k Workspace.
Custom css for the i5k workspace track styles.
Django website project for common sequence search tools.
ncbi loader via the eutils interface
This is a repository to collect our JBrowse and Apollo track configuration files.
Convert your alignment files in BAM format into coverage files in bigWig format
Creates a view to display a glossary of all Tripal 3 organism
Create JBrowse field on Tripal 3 Gene Pages
Conversion programs that use the output from fasta_diff.py to convert coordinates and IDs in different format files.
update gff3 coordinates to new assembly versions
Setup your development environment for genomics applications easily by setting up a Virtualbox VM through Vagrant.
a drupal fields module for organism display for i5k
Generate statistics report (commit/insertion/deletion) of your github repos
drupal Features module for analysis bundle
Provides a Drupal interface for linking and managing users for Apollo
learning notes from i5k-workspace
NAL specific customizations to the genomics workspace application
Provides an admin layer and forms for users to submit organisms and analysis into Chado