Repositories
-
Apollo
Forked from GMOD/ApolloCustomized version of Apollo, which is a genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
-
-
ColorByType
A JBrowse plugin to color the features according the feature type
-
jbrowse
Customized version of jbrowse used for NAL-i5k
-
general_issues
for issues and discussions not tied to a specific repository
-
Organism_Onboarding
A workflow to make organism onboarding pipeline easy to handle as an I/O pipeline
-
content_onboarding_scripts
Ancillary scripts for onboarding content at the i5k Workspace.
-
NAL_CSS
Custom css for the i5k workspace track styles.
-
genomics-workspace
Django website project for common sequence search tools.
-
tripal_eutils
ncbi loader via the eutils interface
-
jbrowse_track_configs
This is a repository to collect our JBrowse and Apollo track configuration files.
-
wiggle-tools
Forked from chienyuehlee/wiggle-tools -
bam_to_bigwig
Forked from hotdogee/bam_to_bigwigConvert your alignment files in BAM format into coverage files in bigWig format
-
t3_species_glossary
Creates a view to display a glossary of all Tripal 3 organism
-
gene_jbrowse_field
Create JBrowse field on Tripal 3 Gene Pages
-
coordinates_conversion
Conversion programs that use the output from fasta_diff.py to convert coordinates and IDs in different format files.
-
remap-gff3
update gff3 coordinates to new assembly versions
-
genomics-VM
Setup your development environment for genomics applications easily by setting up a Virtualbox VM through Vagrant.
-
tripal3_organism_layout
a drupal fields module for organism display for i5k
-
github_stat
Generate statistics report (commit/insertion/deletion) of your github repos
-
i5k_analysis
drupal Features module for analysis bundle
-
tripal_apollo
Provides a Drupal interface for linking and managing users for Apollo
-
notes
learning notes from i5k-workspace
-
NAL-genomics-workspace
NAL specific customizations to the genomics workspace application
-
tripal_chado_datasets
Provides an admin layer and forms for users to submit organisms and analysis into Chado