Error compiling LIS

[laurizioA]

Hi!

An error occurs when compiling the LIS, the following message appears:

**"...
Generating dependencies for ../dataassim/obs/ANSA_SNWD/ANSASNWDsnow_Mod.F90
Generating dependencies for ../dataassim/obs/ANSA_SCF/ANSASCFsnow_Mod.F90
Generating dependencies for ../optUE/type/paramestim/obs/AMSRE_SR/AMSRE_SR_em_obsMod.F90
gfortran -I/home/codesal/anaconda3/envs/lisf/include/ -I/home/codesal/anaconda3/envs/lis/include/ -I/home/codesal/anaconda3/envs/lis/include/ -I/home/codesal/anaconda3/envs/lis/include/ -I/home/codesal/anaconda3/envs/lis/include/ -DLIS_JULES -I./ -I../core/ -I../params/gfrac/SPORTDaily/ -I../params/gfrac/VIIRSDaily/ -I../surfacemodels/land/vic.4.1.1/ -I../surfacemodels/land/vic.4.1.1/physics/ -I../surfacemodels/land/vic.4.1.2.l/ -I../surfacemodels/land/vic.4.1.2.l/physics/ -I../surfacemodels/land/awral.6.0.0/physics/ -I../surfacemodels/land/rdhm.3.5.6/ -I../surfacemodels/land/rdhm.3.5.6/sac/ -I../surfacemodels/land/rdhm.3.5.6/frz/ -I../surfacemodels/land/rdhm.3.5.6/snow17/ -I../surfacemodels/land/rdhm.3.5.6/sachtet/ ../core/LIS_mpiMod.F90
/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/Scrt1.o: In function "_start":
(.text+0x20): undefined reference to "main"
collect2: error: ld returned 1 exit status
Makefile:140: recipe for target 'LIS_mpiMod.o' failed
make: *** [LIS_mpiMod.o] Error 1

[ERR] Compile failed
-------------------------------------------------------------------"**

Could anyone help in solving this problem?

[dmocko]

Hi @laurizioA

Sorry for the delay in the response. Several team members are getting the last of summer vacations in before schools start up.

Can you please attach your "configure.lis" file to this thread?

[dmocko]

The hdf.f90 file should here for you: /home/codesal/anaconda3/envs/lisf/include/hdf.f90

If it's not there, then you will need to re-install HDF4.

Please be sure that this is in your LD_LIBRARY_PATH: /home/codesal/anaconda3/envs/lisf/lib/

[laurizioA]

Resolved previous issues, but other errors appear.
Included in .bashrc:
export PATH=/home/codesal/anaconda3/envs/lisf:$PATH
export LD_LIBRARY_PATH=/usr/local/hdf4/lib:/home/codesal/anaconda3/envs/lisf/lib:$LD_LIBRARY_PATH

When I run the .compile the following error appears:

**gfortran -c -ffree-line-length-0 -O2 -fbacktrace -DSPMD -fconvert=big-endian -DHIDE_SHR_MSG -DNO_SHR_VMATH -DGFORTRAN -DLINUX -I/home/codesal/anaconda3/envs/lisf/mod -I/home/codesal/anaconda3/envs/lisf/include/ -I/home/codesal/anaconda3/envs/lisf/include/ -I/home/codesal/anaconda3/envs/lisf/include/ -I/usr/local/hdf4/include/ -I/home/codesal/anaconda3/envs/lisf/include/ -DLIS_JULES -I./ -I../core/ -I../params/gfrac/SPORTDaily/ -I../params/gfrac/VIIRSDaily/ -I../surfacemodels/land/vic.4.1.1/ -I../surfacemodels/land/vic.4.1.1/physics/ -I../surfacemodels/land/vic.4.1.2.l/ -I../surfacemodels/land/vic.4.1.2.l/physics/ -I../surfacemodels/land/awral.6.0.0/physics/ -I../surfacemodels/land/rdhm.3.5.6/ -I../surfacemodels/land/rdhm.3.5.6/sac/ -I../surfacemodels/land/rdhm.3.5.6/frz/ -I../surfacemodels/land/rdhm.3.5.6/snow17/ -I../surfacemodels/land/rdhm.3.5.6/sachtet/ ../core/LIS_DAobservationsMod.F90
../core/LIS_DAobservationsMod.F90:1327:18:

1327 | call MPI_BCAST(LIS_obs_offsets(k,:), LIS_npes, MPI_INTEGER,0, LIS_mpi_comm, ierr)
| 1
......
1822 | call MPI_BCAST(gtmp1d, LIS_rc%obs_gnc(k)*LIS_rc%obs_gnr(k), MPI_REAL,0, &
| 2
Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(4)).
../core/LIS_DAobservationsMod.F90:1168:25:

1168 | call MPI_BCAST(LIS_obs_goffsets(k,:), LIS_npes, MPI_INTEGER,0, &
| 1
......
1822 | call MPI_BCAST(gtmp1d, LIS_rc%obs_gnc(k)*LIS_rc%obs_gnr(k), MPI_REAL,0, &
| 2
Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(4)).
../core/LIS_DAobservationsMod.F90:1192:25:

1192 | call MPI_BCAST(LIS_obsens_goffsets(k,:), LIS_npes, MPI_INTEGER,0, &
| 1
......
1822 | call MPI_BCAST(gtmp1d, LIS_rc%obs_gnc(k)*LIS_rc%obs_gnr(k), MPI_REAL,0, &
| 2
Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(4)).
../core/LIS_DAobservationsMod.F90:369:25:

369 | call MPI_BCAST(LIS_ooffsets(k,:), LIS_npes, MPI_INTEGER,0, &
| 1
......
1822 | call MPI_BCAST(gtmp1d, LIS_rc%obs_gnc(k)*LIS_rc%obs_gnr(k), MPI_REAL,0, &
| 2
Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(4)).
make: *** [Makefile:140: LIS_DAobservationsMod.o] Erro 1

[ERR] Compile failed
-------------------------------------------------------------------**

The installed MPI is version 4.0.2.

[Lise-Li]

Hi, @laurizioA have your problem solved? I met the same problem with you, and I don't know how to solve it. Would you mind letting me know how you configured HDF4? Thank you!

[laurizioA]

Hi, @Lise-Li!

I installed hdf4 by "sudo apt install hdf4-tools -y" and pointed to "export LDT_HDF4=/usr". But I have a problem with ESMF.

[Lise-Li]

Hi,@laurizioA! Thank you for your reply! I'll try again!