add config option in doc of all tools

bin/agat_convert_bed2gff.pl

@@ -496,7 +496,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_embl2gff.pl

@@ -264,7 +264,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_genscan2gff.pl

@@ -310,7 +310,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_mfannot2gff.pl

@@ -464,7 +464,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_minimap2_bam2gff.pl

@@ -385,7 +385,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_sp_gff2bed.pl

@@ -266,7 +266,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_sp_gff2gtf.pl

@@ -142,7 +142,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_sp_gff2tsv.pl

@@ -273,7 +273,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_sp_gff2zff.pl

@@ -208,7 +208,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_convert_sp_gxf2gxf.pl

@@ -112,7 +112,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_Prokka_inferNameFromAttributes.pl

@@ -160,7 +160,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_add_attribute_shortest_exon_size.pl

@@ -180,7 +180,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>
 

bin/agat_sp_add_attribute_shortest_intron_size.pl

@@ -189,7 +189,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>
 

bin/agat_sp_add_introns.pl

@@ -202,7 +202,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>
 

bin/agat_sp_add_start_and_stop.pl

@@ -407,7 +407,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>
 

bin/agat_sp_alignment_output_style.pl

@@ -105,7 +105,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_clipN_seqExtremities_and_fixCoordinates.pl

@@ -268,7 +268,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_compare_two_BUSCOs.pl

@@ -366,7 +366,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>
 

bin/agat_sp_compare_two_annotations.pl

@@ -692,7 +692,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_complement_annotations.pl

@@ -191,7 +191,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>
 

bin/agat_sp_ensembl_output_style.pl

@@ -109,7 +109,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_extract_attributes.pl

@@ -297,7 +297,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_extract_sequences.pl

@@ -1054,7 +1054,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =back
 

bin/agat_sp_filter_by_ORF_size.pl

@@ -262,7 +262,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_by_locus_distance.pl

@@ -292,7 +292,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_by_mrnaBlastValue.pl

@@ -212,7 +212,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_feature_by_attribute_presence.pl

@@ -329,7 +329,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_feature_by_attribute_value.pl

@@ -361,7 +361,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_feature_from_keep_list.pl

@@ -297,7 +297,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_feature_from_kill_list.pl

@@ -319,7 +319,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_gene_by_intron_numbers.pl

@@ -266,7 +266,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_gene_by_length.pl

@@ -290,7 +290,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_incomplete_gene_coding_models.pl

@@ -377,7 +377,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_filter_record_by_coordinates.pl

@@ -299,7 +299,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_fix_cds_phases.pl

@@ -117,7 +117,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<-h> or B<--help>
 

bin/agat_sp_fix_features_locations_duplicated.pl

@@ -542,7 +542,7 @@ =head1 OPTIONS
 
 String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, 
 otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose".
-The --config option gives yo the possibility to use your own AGAT config file (located elsewhere or named differently).
+The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
 
 =item B<--help> or B<-h>