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NBIS-Meta 2.0
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@johnne johnne released this 07 Jun 17:52
v2.0
3cb0d43
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Version 2.0 of the NBIS-Metagenomics workflow.

This version includes among other things:

  • a slimmed down core conda environment
  • restructured workflow more in line with Snakemake template
  • support for snakemake reports
  • support for MetaPhlAn v3
  • more genome binning support + QC with checkm, GTDB-TK and trRNA/rRNA counting.
  • integrated SLURM profile support for running the workflow on clusters (e.g. Uppmax)
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