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Disable fixme warning in raw_data_importer.
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talavis committed Aug 15, 2019
1 parent 990bc69 commit 09bdb43
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/importer/data_importer/raw_data_importer.py
Original file line number Diff line number Diff line change
Expand Up @@ -234,7 +234,7 @@ def _parse_manta(self): # pylint: disable=too-many-locals,too-many-branches,too
re.search(r'(.+)[[\]](.*?):(\d+)[[\]]', alt).groups()
if data['mate_chrom'].startswith('GL') or data['mate_chrom'].startswith('MT'):
# A BND from a chromosome to GL or MT.
# TODO ask a bioinformatician if these cases should be included or not
# TODO ask a bioinformatician if these cases should be included or not # pylint: disable=fixme
continue
data['mate_id'] = info.get('MATEID', '')
data['variant_id'] = '{}-{}-{}-{}'.format(data['chrom'],
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