Make mate ends 0-based in beacon

NBISweden · May 22, 2019 · 91fed50 · 91fed50
1 parent e19cb37
commit 91fed50
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/sql/beacon_schema.sql b/sql/beacon_schema.sql
@@ -101,7 +101,7 @@ CREATE OR REPLACE VIEW beacon.beacon_mate_table AS
            dm.allele_count as alleleCount,
            dm.allele_num as callCount,
            dm.allele_freq as frequency,
-           dm.mate_start as "end",
+           dm.mate_start - 1 as "end",
            'BND' as variantType
      FROM data.mate AS dm
       JOIN beacon.available_datasets as av