Merge 88d6455 into 57b1e72

NBISweden · Jun 27, 2019 · eef7cac · eef7cac
2 parents 57b1e72 + 88d6455
commit eef7cac
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/backend/db.py b/backend/db.py
@@ -269,10 +269,10 @@ class Meta:
 
 class VariantMate(BaseModel):
     class Meta:
-        table_name = "mate"
+        table_name = "mates"
         schema = 'data'
 
-    dataset_version = ForeignKeyField(DatasetVersion, column_name="dataset_version", backref="mate")
+    dataset_version = ForeignKeyField(DatasetVersion, column_name="dataset_version", backref="mates")
     chrom = CharField(max_length=10)
     pos = IntegerField()
     ref = CharField()

diff --git a/sql/beacon_schema.sql b/sql/beacon_schema.sql
@@ -103,7 +103,7 @@ CREATE OR REPLACE VIEW beacon.beacon_mate_table AS
            dm.allele_freq as frequency,
            dm.mate_start - 1 as "end",
            'BND' as variantType
-     FROM data.mate AS dm
+     FROM data.mates AS dm
       JOIN beacon.available_datasets as av
         ON dm.dataset_version = av.id
       JOIN data.datasets as d

diff --git a/sql/data_schema.sql b/sql/data_schema.sql
@@ -173,7 +173,7 @@ CREATE TABLE IF NOT EXISTS data.variants (
 );
 
 -- For storing breakends
-CREATE TABLE IF NOT EXISTS data.mate (
+CREATE TABLE IF NOT EXISTS data.mates (
     id integer PRIMARY KEY GENERATED BY DEFAULT AS IDENTITY,
     dataset_version integer REFERENCES data.dataset_versions,
     chrom_id varchar(128),  -- column 3 in vcf