fixed links in verifying installation

except for 'Checking the build — running something.` I'm not sure
where this should go

guide/verifying-installation.rst

@@ -11,9 +11,9 @@ Verifying installation
 The Lorenz model is notoriously sensitive to very small changes; in
 fact, the story of Lorenz discovering this sensitivity is a classic in
 the annals of the study of chaos, which in turn was instrumental in the
-development of data assimilation as a field of study. See `The Lorenz 63
-model: what is it and why should we care? <#Lorenz63>`__ or `What is
-data assimilation? <#WhatIsDA>`__ for more information.
+development of data assimilation as a field of study. See :doc:`The Lorenz 63
+model: what is it and why should we care? <lorenz-63-model>` or :doc:`What is
+data assimilation? <introduction-ensemble-da>` for more information.
 
 This sensitivity is of practical interest for verifying these results.
 The initial conditions files and observations sequences are provided in
@@ -99,22 +99,22 @@ Congratulations! You have now successfully configured DART and are ready
 to begin the next phase of your interaction with DART. You may wish to
 learn more about:
 
--  `What is data assimilation? <#WhatIsDA>`__ — a brief introduction to
+-  :doc:`What is data assimilation? <introduction-ensemble-da>` — a brief introduction to
    ensemble data assimilation. This section includes more information
    about the Lorenz 63 model and how to configure the ``input.nml`` file
    to play with DA experiments in DART using the Lorenz 63 model.
--  `What is DART? <#WhatIsDART>`__ — This section includes more
+-  :doc:`What is DART? <what-is-dart>` — This section includes more
    information about DART and a basic flow chart of the overall DART
    workflow.
--  `How do I run DART with my model? <#RunWithMyModel>`__
--  `How do I add my observations to DART? <#RunWithMyObs>`__
--  `How would I use DART for teaching students and/or
-   myself? <#DartForEducation>`__
--  `How can I contribute to DART? <#ContributeToDart>`__
+-  :doc:`How do I run DART with my model? <required-model-mod-routines>`
+-  :doc:`How do I add my observations to DART? <adding-your-observations-to-dart>`
+-  :doc:`How would I use DART for teaching students and/or
+   myself? <../theory/readme>`
+-  :doc:`How can I contribute to DART? <contributors-guide>`
 
 .. note:: 
 
    In the case that the above instructions had one or more issues that either
    did not work for you as intended or were confusing, please contact the DART
    software development team at dart@ucar.edu. We value your input to make
-   getting started as smooth as possible for new DART users!
+   getting started as smooth as possible for new DART users!