Skip to content

Commit

Permalink
Deploying to gh-pages from @ 5e58e3c 🚀
Browse files Browse the repository at this point in the history
  • Loading branch information
RichardBruskiewich committed Sep 1, 2023
1 parent 1041535 commit 1943fd4
Show file tree
Hide file tree
Showing 3 changed files with 61 additions and 16 deletions.
40 changes: 32 additions & 8 deletions _sources/validation_codes_dictionary.md.txt
Original file line number Diff line number Diff line change
Expand Up @@ -664,14 +664,6 @@

**Description:** A qualifier qualifier_type_id must be defined in the specified version of Biolink!

### error.knowledge_graph.edge.qualifiers.qualifier.value.unresolved

**Message:** Qualifier_type_id for edge has unresolved qualifier_value

**Context:** edge_id, identifier, qualifier_type_id

**Description:** A 'qualifier_value' for the specified 'qualifier_type_id' of a qualifier likely could not be resolved without knowledge of the edge category!

### error.knowledge_graph.edge.qualifiers.qualifier.value.not_a_predicate

**Message:** Qualifier_type_id 'biolink:qualified_predicate' for edge has a qualifier_value which is not a Biolink predicate.
Expand Down Expand Up @@ -918,6 +910,14 @@

**Description:** A predicate selected for use in a query graph should preferably be tagged as 'canonical' in the specified Biolink Model release?

### warning.query_graph.edge.qualifier_constraints.qualifier_set.qualifiers.qualifier.value.unresolved

**Message:** The 'qualifier_type_id' for edge has unresolved 'qualifier_value'

**Context:** edge_id, identifier, qualifier_type_id

**Description:** A 'qualifier_value' for the specified 'qualifier_type_id' of a qualifier likely could not be resolved without knowledge of the edge category!

### warning.knowledge_graph.node.category.deprecated

**Message:** Node has deprecated category
Expand Down Expand Up @@ -958,6 +958,30 @@

**Description:** A predicate selected for use in a knowledge graph should preferably be tagged as 'canonical' in the specified Biolink Model release?

### warning.knowledge_graph.edge.qualifiers.qualifier.value.unresolved

**Message:** The 'qualifier_type_id' for edge has unresolved 'qualifier_value'

**Context:** edge_id, identifier, qualifier_type_id

**Description:** A 'qualifier_value' for the specified 'qualifier_type_id' of a qualifier likely could not be resolved without knowledge of the edge category!

### warning.knowledge_graph.edge.attribute.type_id.is_category

**Message:** Edge has an 'attribute_type_id' that is a category

**Context:** edge_id, identifier

**Description:** Edge 'attribute_type_id' value is usually not drawn from the node category hierarchy.

### warning.knowledge_graph.edge.attribute.type_id.is_predicate

**Message:** Edge has an 'attribute_type_id' that is a predicate

**Context:** edge_id, identifier

**Description:** Edge 'attribute_type_id' value is usually not drawn from the node predicate hierarchy.

### warning.knowledge_graph.edge.attribute.type_id.not_association_slot

**Message:** Edge has an attribute_type_id that is not an association slot
Expand Down
2 changes: 1 addition & 1 deletion searchindex.js

Large diffs are not rendered by default.

35 changes: 28 additions & 7 deletions validation_codes_dictionary.html
Original file line number Diff line number Diff line change
Expand Up @@ -139,7 +139,6 @@
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-qualifiers-not-array">error.knowledge_graph.edge.qualifiers.not_array</a></li>
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-qualifiers-empty">error.knowledge_graph.edge.qualifiers.empty</a></li>
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-qualifiers-qualifier-type-id-unknown">error.knowledge_graph.edge.qualifiers.qualifier.type_id.unknown</a></li>
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-qualifiers-qualifier-value-unresolved">error.knowledge_graph.edge.qualifiers.qualifier.value.unresolved</a></li>
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-qualifiers-qualifier-value-not-a-predicate">error.knowledge_graph.edge.qualifiers.qualifier.value.not_a_predicate</a></li>
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-qualifiers-qualifier-invalid">error.knowledge_graph.edge.qualifiers.qualifier.invalid</a></li>
<li class="toctree-l3"><a class="reference internal" href="#error-knowledge-graph-edge-sources-missing">error.knowledge_graph.edge.sources.missing</a></li>
Expand Down Expand Up @@ -175,11 +174,15 @@
<li class="toctree-l3"><a class="reference internal" href="#warning-query-graph-node-ids-unmapped-prefix">warning.query_graph.node.ids.unmapped_prefix</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-query-graph-edge-predicate-deprecated">warning.query_graph.edge.predicate.deprecated</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-query-graph-edge-predicate-non-canonical">warning.query_graph.edge.predicate.non_canonical</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-query-graph-edge-qualifier-constraints-qualifier-set-qualifiers-qualifier-value-unresolved">warning.query_graph.edge.qualifier_constraints.qualifier_set.qualifiers.qualifier.value.unresolved</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-node-category-deprecated">warning.knowledge_graph.node.category.deprecated</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-node-category-abstract-or-mixin">warning.knowledge_graph.node.category.abstract_or_mixin</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-node-id-unmapped-prefix">warning.knowledge_graph.node.id.unmapped_prefix</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-predicate-deprecated">warning.knowledge_graph.edge.predicate.deprecated</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-predicate-non-canonical">warning.knowledge_graph.edge.predicate.non_canonical</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-qualifiers-qualifier-value-unresolved">warning.knowledge_graph.edge.qualifiers.qualifier.value.unresolved</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-attribute-type-id-is-category">warning.knowledge_graph.edge.attribute.type_id.is_category</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-attribute-type-id-is-predicate">warning.knowledge_graph.edge.attribute.type_id.is_predicate</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-attribute-type-id-not-association-slot">warning.knowledge_graph.edge.attribute.type_id.not_association_slot</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-attribute-type-id-non-biolink-prefix">warning.knowledge_graph.edge.attribute.type_id.non_biolink_prefix</a></li>
<li class="toctree-l3"><a class="reference internal" href="#warning-knowledge-graph-edge-attribute-type-id-deprecated">warning.knowledge_graph.edge.attribute.type_id.deprecated</a></li>
Expand Down Expand Up @@ -737,12 +740,6 @@ <h3>error.knowledge_graph.edge.qualifiers.qualifier.type_id.unknown<a class="hea
<p><strong>Context:</strong> edge_id, identifier</p>
<p><strong>Description:</strong> A qualifier qualifier_type_id must be defined in the specified version of Biolink!</p>
</section>
<section id="error-knowledge-graph-edge-qualifiers-qualifier-value-unresolved">
<h3>error.knowledge_graph.edge.qualifiers.qualifier.value.unresolved<a class="headerlink" href="#error-knowledge-graph-edge-qualifiers-qualifier-value-unresolved" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> Qualifier_type_id for edge has unresolved qualifier_value</p>
<p><strong>Context:</strong> edge_id, identifier, qualifier_type_id</p>
<p><strong>Description:</strong> A ‘qualifier_value’ for the specified ‘qualifier_type_id’ of a qualifier likely could not be resolved without knowledge of the edge category!</p>
</section>
<section id="error-knowledge-graph-edge-qualifiers-qualifier-value-not-a-predicate">
<h3>error.knowledge_graph.edge.qualifiers.qualifier.value.not_a_predicate<a class="headerlink" href="#error-knowledge-graph-edge-qualifiers-qualifier-value-not-a-predicate" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> Qualifier_type_id ‘biolink:qualified_predicate’ for edge has a qualifier_value which is not a Biolink predicate.</p>
Expand Down Expand Up @@ -932,6 +929,12 @@ <h3>warning.query_graph.edge.predicate.non_canonical<a class="headerlink" href="
<p><strong>Context:</strong> edge_id, identifier</p>
<p><strong>Description:</strong> A predicate selected for use in a query graph should preferably be tagged as ‘canonical’ in the specified Biolink Model release?</p>
</section>
<section id="warning-query-graph-edge-qualifier-constraints-qualifier-set-qualifiers-qualifier-value-unresolved">
<h3>warning.query_graph.edge.qualifier_constraints.qualifier_set.qualifiers.qualifier.value.unresolved<a class="headerlink" href="#warning-query-graph-edge-qualifier-constraints-qualifier-set-qualifiers-qualifier-value-unresolved" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> The ‘qualifier_type_id’ for edge has unresolved ‘qualifier_value’</p>
<p><strong>Context:</strong> edge_id, identifier, qualifier_type_id</p>
<p><strong>Description:</strong> A ‘qualifier_value’ for the specified ‘qualifier_type_id’ of a qualifier likely could not be resolved without knowledge of the edge category!</p>
</section>
<section id="warning-knowledge-graph-node-category-deprecated">
<h3>warning.knowledge_graph.node.category.deprecated<a class="headerlink" href="#warning-knowledge-graph-node-category-deprecated" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> Node has deprecated category</p>
Expand Down Expand Up @@ -962,6 +965,24 @@ <h3>warning.knowledge_graph.edge.predicate.non_canonical<a class="headerlink" hr
<p><strong>Context:</strong> edge_id, identifier</p>
<p><strong>Description:</strong> A predicate selected for use in a knowledge graph should preferably be tagged as ‘canonical’ in the specified Biolink Model release?</p>
</section>
<section id="warning-knowledge-graph-edge-qualifiers-qualifier-value-unresolved">
<h3>warning.knowledge_graph.edge.qualifiers.qualifier.value.unresolved<a class="headerlink" href="#warning-knowledge-graph-edge-qualifiers-qualifier-value-unresolved" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> The ‘qualifier_type_id’ for edge has unresolved ‘qualifier_value’</p>
<p><strong>Context:</strong> edge_id, identifier, qualifier_type_id</p>
<p><strong>Description:</strong> A ‘qualifier_value’ for the specified ‘qualifier_type_id’ of a qualifier likely could not be resolved without knowledge of the edge category!</p>
</section>
<section id="warning-knowledge-graph-edge-attribute-type-id-is-category">
<h3>warning.knowledge_graph.edge.attribute.type_id.is_category<a class="headerlink" href="#warning-knowledge-graph-edge-attribute-type-id-is-category" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> Edge has an ‘attribute_type_id’ that is a category</p>
<p><strong>Context:</strong> edge_id, identifier</p>
<p><strong>Description:</strong> Edge ‘attribute_type_id’ value is usually not drawn from the node category hierarchy.</p>
</section>
<section id="warning-knowledge-graph-edge-attribute-type-id-is-predicate">
<h3>warning.knowledge_graph.edge.attribute.type_id.is_predicate<a class="headerlink" href="#warning-knowledge-graph-edge-attribute-type-id-is-predicate" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> Edge has an ‘attribute_type_id’ that is a predicate</p>
<p><strong>Context:</strong> edge_id, identifier</p>
<p><strong>Description:</strong> Edge ‘attribute_type_id’ value is usually not drawn from the node predicate hierarchy.</p>
</section>
<section id="warning-knowledge-graph-edge-attribute-type-id-not-association-slot">
<h3>warning.knowledge_graph.edge.attribute.type_id.not_association_slot<a class="headerlink" href="#warning-knowledge-graph-edge-attribute-type-id-not-association-slot" title="Permalink to this heading"></a></h3>
<p><strong>Message:</strong> Edge has an attribute_type_id that is not an association slot</p>
Expand Down

0 comments on commit 1943fd4

Please sign in to comment.