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update Examples 1 and 4
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stevenchong committed Aug 9, 2019
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36 changes: 16 additions & 20 deletions docs/eml-semantic-annotation-primer.md
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Expand Up @@ -120,14 +120,11 @@ id 'dataset-01' is about grassland biome(s)".

```xml
<dataset id="dataset-01">
<title>Data from Cedar Creek LTER on productivity and species richness for use in a workshop titled
"An Analysis of the Relationship between Productivity and Diversity using Experimental Results from
the Long-Term Ecological Research Network" held at NCEAS in September 1996.</title>
<title>Soil organic matter responses to nutrient enrichment in the Nutrient Network:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function.</title>
<creator id="clarence.lehman">
<individualName>
<salutation>Mr.</salutation>
<givenName>Clarence</givenName>
<surName>Lehman</surName>
<givenName>Eric</givenName>
<surName>Seabloom</surName>
</individualName>
</creator>
...
Expand Down Expand Up @@ -241,16 +238,16 @@ of annotations must be placed TO DO< WHERE IN DOC? [[MPS: I don't know the answe
Example 4 contains 3 different annotations.

In the first, the subject is the `dataTable` element with the `id`
of "CDF-biodiv-table". Its annotation components are analogous to Example 2 above, again referencing terms in [IAO](#iao) and [ENVO](#envo). The semantic statement can be read as
of "CDF-soil-table". Its annotation components are analogous to Example 2 above, again referencing terms in [IAO](#iao) and [ENVO](#envo). The semantic statement can be read as

- "the dataTable with the `id` 'CDR-biodiv-table' is about grassland biome(s)".
- "the dataTable with the `id` 'CDR-soil-table' is about grassland biome(s)".

The second and third annotations both have individual persons as their subjects -- the `creator` element that has the `id` "adam.shepherd".

Respectively, their semantic statements can be read as

- "'adam.shepherd', the creator (of the dataset), is a person".
- "'adam.shepherd', the creator (of the dataset), is a member of BCO-DMO".
- "'eric.seabloom', the creator (of the dataset), is a person".
- "'eric.seabloom', the creator (of the dataset), is a member of BCO-DMO".

The ontologies used for adam.shepherd are

Expand All @@ -266,30 +263,29 @@ The ontologies used for adam.shepherd are
<eml>
...
<dataset id="dataset-01">
<title>Data from Cedar Creek LTER on productivity and species richness for use in a workshop titled "An Analysis of the Relationship between Productivity and Diversity using Experimental Results from the Long-Term Ecological Research Network" held at NCEAS in September 1996.</title>
<creator id="adam.shepherd">
<title>Soil organic matter responses to nutrient enrichment in the Nutrient Network:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function.</title>
<creator id="eric.seabloom">
<individualName>
<salutation>Mr.</salutation>
<givenName>Adam</givenName>
<surName>Shepherd</surName>
<givenName>Eric</givenName>
<surName>Seabloom</surName>
</individualName>
</creator>
<dataTable id="CDR-biodiv-table">
<entityName>CDR LTER-patterns among communities.txt</entityName>
<dataTable id="CDR-soil-table">
<entityName>e247_Soil organic matter responses to nutrient enrichment in the Nutrient Network</entityName>
...
</dataTable>
</dataset>
...
<annotations>
<annotation references="CDR-biodiv-table">
<annotation references="CDR-soil-table">
<propertyURI label="is about">http://purl.obolibrary.org/obo/IAO_0000136</propertyURI>
<valueURI label="grassland biome">http://purl.obolibrary.org/obo/ENVO_01000177</valueURI>
</annotation>
<annotation references="adam.shepherd">
<annotation references="eric.seabloom">
<propertyURI label="is a">http://www.w3.org/1999/02/22-rdf-syntax-ns#type</propertyURI>
<valueURI label="Person">https://schema.org/Person</valueURI>
</annotation>
<annotation references="adam.shepherd">
<annotation references="eric.seabloom">
<propertyURI label="member of">https://schema.org/memberOf</propertyURI>
<valueURI label="BCO-DMO">https://doi.org/10.17616/R37P4C</valueURI>
</annotation>
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