docs/docs/DataPackage.html

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    <h1 class="page-title">Class: DataPackage</h1>

    
<section>

<header>
    
        <h2><span class="attribs"><span class="type-signature"></span></span>DataPackage<span class="signature">()</span><span class="type-signature"></span></h2>
        
            <div class="class-description">A DataPackage represents a hierarchical collection of
       packages, metadata, and data objects, modeling an OAI-ORE RDF graph.
       TODO: incorporate Backbone.UniqueModel</div>
        

</header>

<article>
    <div class="container-overview">
    
        
    <h2>Constructor</h2>
    

    <h4 class="name" id="DataPackage"><span class="type-signature"></span>new DataPackage<span class="signature">()</span><span class="type-signature"></span></h4>
    

<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line11">line 11</a>
    </li></ul></dd>
    

</dl>


    </div>

    
        <h3 class="subsection-title">Extends</h3>

        
    <ul>
        <li>Backbone.Collection</li>
    </ul>


        <h3 class="subsection-title">Members</h3>

        
<h4 class="name" id="comparator"><span class="type-signature"></span>comparator<span class="type-signature"> :string</span></h4>


<div class="description">
    Keep the collection sorted by model "sortOrder".  The three model types are ordered as:
 Metadata: 1
 Data: 2
 DataPackage: 3
See getMember(). We do this so that Metadata get rendered first, and Data are
rendered as DOM siblings of the Metadata rows of the DataPackage table.
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">string</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line86">line 86</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="dataPackageGraph"><span class="type-signature"></span>dataPackageGraph<span class="type-signature"> :RDFGraph</span></h4>


<div class="description">
    The RDF graph representing this data package
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">RDFGraph</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line54">line 54</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="editable"><span class="type-signature"></span>editable<span class="type-signature"> :boolean</span></h4>


<div class="description">
    A flag ued for the package's edit status. Can be
set to false to 'lock' the package
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">boolean</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line48">line 48</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="filterModel"><span class="type-signature"></span>filterModel<span class="type-signature"> :<a href="Filter.html">Filter</a></span></h4>


<div class="description">
    A Filter model that should filter the Solr index for only the
objects aggregated by this package.
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type"><a href="Filter.html">Filter</a></span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line107">line 107</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="id"><span class="type-signature"></span>id<span class="type-signature"> :string</span></h4>


<div class="description">
    The package identifier
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">string</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line33">line 33</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="namespaces"><span class="type-signature"></span>namespaces<span class="type-signature"> :object</span></h4>


<div class="description">
    Define the namespaces used in the RDF XML
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">object</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line112">line 112</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="nodeLevel"><span class="type-signature"></span>nodeLevel<span class="type-signature"> :number</span></h4>


<div class="description">
    The nesting level in a data package hierarchy
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">number</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line92">line 92</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="originalIsDocBy"><span class="type-signature"></span>originalIsDocBy<span class="type-signature"> :object</span></h4>


<div class="description">
    The science data identifiers associated with this
data package (from cito:documents), mapped to the science metadata
identifier that documents it
Not to be changed after initial fetch - this is to keep track of the relationships in their original state
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">object</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line68">line 68</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="originalMembers"><span class="type-signature"></span>originalMembers<span class="type-signature"> :Array.&lt;string></span></h4>


<div class="description">
    An array of ids that are aggregated in the resource map on the server.
Taken from the original RDF XML that was fetched from the server.
Used for comparing the original aggregation with the aggregation of this collection.
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">Array.&lt;string></span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line75">line 75</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="packageModel"><span class="type-signature"></span>packageModel<span class="type-signature"> :<a href="DataONEObject.html">DataONEObject</a></span></h4>


<div class="description">
    A DataONEObject representing the resource map itself
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type"><a href="DataONEObject.html">DataONEObject</a></span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line60">line 60</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="provEdits"><span class="type-signature"></span>provEdits<span class="type-signature"></span></h4>


<div class="description">
    Contains provenance relationships added or deleted to this DataONEObject.
Each entry is [operation ('add' or 'delete'), prov field name, object id], i.e. ['add', 'prov_used', 'urn:uuid:5678']
</div>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line136">line 136</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="solrResults"><span class="type-signature"></span>solrResults<span class="type-signature"> :SolrResults</span></h4>


<div class="description">
    The SolrResults collection associated with this DataPackage.
This can be used to fetch the package from Solr by passing the 'fromIndex' option
to fetch().
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">SolrResults</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line100">line 100</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="transferQueue"><span class="type-signature"></span>transferQueue<span class="type-signature"> :<a href="DataPackage.html">DataPackage</a>|Metadata|Array.&lt;Data></span></h4>


<div class="description">
    The type of the object (DataPackage, Metadata, Data)
Simple queue to enqueue file transfers. Use push() and shift()
to add and remove items. If this gets to large/slow, possibly
switch to http://code.stephenmorley.org/javascript/queues/
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type"><a href="DataPackage.html">DataPackage</a></span>
|

<span class="param-type">Metadata</span>
|

<span class="param-type">Array.&lt;Data></span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line42">line 42</a>
    </li></ul></dd>
    

</dl>


<h4 class="name" id="type"><span class="type-signature"></span>type<span class="type-signature"> :string</span></h4>


<div class="description">
    The name of this type of collection
</div>


    <h5>Type:</h5>
    <ul>
        <li>
            
<span class="param-type">string</span>


        </li>
    </ul>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line27">line 27</a>
    </li></ul></dd>
    

</dl>


        <h3 class="subsection-title">Methods</h3>

        
    <h4 class="name" id="fetch"><span class="type-signature"></span>fetch<span class="signature">(options<span class="signature-attributes">opt</span>)</span><span class="type-signature"></span></h4>
    

<div class="description">
    Overload fetch calls for a DataPackage
</div>


    <h5>Parameters:</h5>
    

<table class="params">
    <thead>
    <tr>
        
        <th>Name</th>
        

        <th>Type</th>

        
        <th>Attributes</th>
        

        <th class="last">Description</th>
    </tr>
    </thead>

    <tbody>
    

        <tr>
            
                <td class="name"><code>options</code></td>
            

            <td class="type">
            
                
<span class="param-type">Object</span>


            </td>

            
                <td class="attributes">
                
                    &lt;optional><br>
                

                </td>
            

            <td class="description last">Optional options for this fetch that get sent with the XHR request</td>
        </tr>

    
    </tbody>
</table>


    <h5 class="subsection-title">Properties:</h5>

    
<table class="props">
    <thead>
    <tr>
        
        <th>Name</th>
        

        <th>Type</th>

        
        <th class="last">Description</th>
    </tr>
    </thead>

    <tbody>
    

        <tr>
            
                <td class="name"><code>fetchModels</code></td>
            

            <td class="type">
            
                
<span class="param-type">boolean</span>


            </td>

            
            <td class="description last">If false, this fetch will not fetch
 each model in the collection. It will only get the resource map object.</td>
        </tr>

    
        <tr>
            
                <td class="name"><code>fromIndex</code></td>
            

            <td class="type">
            
                
<span class="param-type">boolean</span>


            </td>

            
            <td class="description last">If true, the collection will be fetched from Solr rather than
 fetching the system metadata of each model. Useful when you only need to retrieve limited information about
 each package member. Set query-specific parameters on the `solrResults` SolrResults set on this collection.</td>
        </tr>

    
    </tbody>
</table>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line399">line 399</a>
    </li></ul></dd>
    

</dl>


    <h4 class="name" id="fetchFromIndex"><span class="type-signature"></span>fetchFromIndex<span class="signature">()</span><span class="type-signature"></span></h4>
    

<div class="description">
    Fetches this DataPackage from the Solr index by using a SolrResults collection
and merging the models in.
</div>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line2901">line 2901</a>
    </li></ul></dd>
    

</dl>


    <h4 class="name" id="getCnURI"><span class="type-signature"></span>getCnURI<span class="signature">()</span><span class="type-signature"> &rarr; {string}</span></h4>
    

<div class="description">
    Parses out the CN Resolve URL from the existing statements in the RDF
or if not found in the RDF, from the app configuration.
</div>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line2740">line 2740</a>
    </li></ul></dd>
    

</dl>


<h5>Returns:</h5>

        
<div class="param-desc">
    - The CN resolve URL
</div>


<dl>
    <dt>
        Type
    </dt>
    <dd>
        
<span class="param-type">string</span>


    </dd>
</dl>

    
    <h4 class="name" id="getURIFromRDF"><span class="type-signature"></span>getURIFromRDF<span class="signature">(id)</span><span class="type-signature"> &rarr; {string}</span></h4>
    

<div class="description">
    Finds the given identifier in the RDF graph and returns the subject
URI of that statement. This is useful when adding additional statements
to the RDF graph for an object that already exists in that graph.
</div>


    <h5>Parameters:</h5>
    

<table class="params">
    <thead>
    <tr>
        
        <th>Name</th>
        

        <th>Type</th>

        
        <th class="last">Description</th>
    </tr>
    </thead>

    <tbody>
    

        <tr>
            
                <td class="name"><code>id</code></td>
            

            <td class="type">
            
                
<span class="param-type">string</span>


            </td>

            
            <td class="description last">The identifier to search for</td>
        </tr>

    
    </tbody>
</table>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line2711">line 2711</a>
    </li></ul></dd>
    

</dl>


<h5>Returns:</h5>

        
<div class="param-desc">
    - The full URI for the given id as it exists in the RDF.
</div>


<dl>
    <dt>
        Type
    </dt>
    <dd>
        
<span class="param-type">string</span>


    </dd>
</dl>

    
    <h4 class="name" id="mergeModels"><span class="type-signature"></span>mergeModels<span class="signature">(otherModels, fieldsToMerge<span class="signature-attributes">opt</span>)</span><span class="type-signature"></span></h4>
    

<div class="description">
    Merge the attributes of other models into the corresponding models in this collection.
This should be used when merging models of other types (e.g. SolrResult) that represent the same
object that the DataONEObject models in the collection represent.
</div>


    <h5>Parameters:</h5>
    

<table class="params">
    <thead>
    <tr>
        
        <th>Name</th>
        

        <th>Type</th>

        
        <th>Attributes</th>
        

        <th class="last">Description</th>
    </tr>
    </thead>

    <tbody>
    

        <tr>
            
                <td class="name"><code>otherModels</code></td>
            

            <td class="type">
            
                
<span class="param-type">Array.&lt;Backbone.Model></span>


            </td>

            
                <td class="attributes">
                

                </td>
            

            <td class="description last">the other models to merge with the models in this collection</td>
        </tr>

    
        <tr>
            
                <td class="name"><code>fieldsToMerge</code></td>
            

            <td class="type">
            
                
<span class="param-type">Array.&lt;string></span>


            </td>

            
                <td class="attributes">
                
                    &lt;optional><br>
                

                </td>
            

            <td class="description last">If specified, only these fields will be extracted from the otherModels</td>
        </tr>

    
    </tbody>
</table>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line2933">line 2933</a>
    </li></ul></dd>
    

</dl>


    <h4 class="name" id="removeOrphanedBlankNodes"><span class="type-signature"></span>removeOrphanedBlankNodes<span class="signature">()</span><span class="type-signature"></span></h4>
    

<div class="description">
    Remove orphaned blank nodes from the model's current graph

This was put in to support replacing package members who are
referenced by provenance statements, specifically members typed as
Programs. rdflib.js will throw an error when serializing if any
statements in the graph have objects that are blank nodes when no
other statements in the graph have subjects for the same blank node.
i.e., blank nodes references that aren't defined.

Should be called during a call to serialize() and mutates
this.dataPackageGraph directly as a side-effect.
</div>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line2006">line 2006</a>
    </li></ul></dd>
    

</dl>


    <h4 class="name" id="save"><span class="type-signature"></span>save<span class="signature">(options<span class="signature-attributes">opt</span>)</span><span class="type-signature"></span></h4>
    

<div class="description">
    Overwrite the Backbone.Collection.sync() function to set custom options
</div>


    <h5>Parameters:</h5>
    

<table class="params">
    <thead>
    <tr>
        
        <th>Name</th>
        

        <th>Type</th>

        
        <th>Attributes</th>
        

        <th class="last">Description</th>
    </tr>
    </thead>

    <tbody>
    

        <tr>
            
                <td class="name"><code>options</code></td>
            

            <td class="type">
            
                
<span class="param-type">Object</span>


            </td>

            
                <td class="attributes">
                
                    &lt;optional><br>
                

                </td>
            

            <td class="description last">Options for this DataPackage save
                <h6>Properties</h6>
                

<table class="params">
    <thead>
    <tr>
        
        <th>Name</th>
        

        <th>Type</th>

        
        <th>Attributes</th>
        

        <th class="last">Description</th>
    </tr>
    </thead>

    <tbody>
    

        <tr>
            
                <td class="name"><code>sysMetaOnly</code></td>
            

            <td class="type">
            
                
<span class="param-type">Boolean</span>


            </td>

            
                <td class="attributes">
                
                    &lt;optional><br>
                

                </td>
            

            <td class="description last">If true, only the system metadata of this Package will be saved.</td>
        </tr>

    
        <tr>
            
                <td class="name"><code>resourceMapOnly</code></td>
            

            <td class="type">
            
                
<span class="param-type">Boolean</span>


            </td>

            
                <td class="attributes">
                
                    &lt;optional><br>
                

                </td>
            

            <td class="description last">If true, only the Resource Map/Package object will be saved. Metadata and Data objects aggregated by the package will be skipped.</td>
        </tr>

    
    </tbody>
</table>

            </td>
        </tr>

    
    </tbody>
</table>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line1069">line 1069</a>
    </li></ul></dd>
    

</dl>


    <h4 class="name" id="updateRelationships"><span class="type-signature"></span>updateRelationships<span class="signature">()</span><span class="type-signature"></span></h4>
    

<div class="description">
    Update the relationships in this resource map when its been udpated
</div>


<dl class="details">

    
    <dt class="tag-source">Source:</dt>
    <dd class="tag-source"><ul class="dummy"><li>
        <a href="src_js_collections_DataPackage.js.html">src/js/collections/DataPackage.js</a>, <a href="src_js_collections_DataPackage.js.html#line2988">line 2988</a>
    </li></ul></dd>
    

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