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call rate filter #288

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1teaspoon opened this issue May 16, 2024 · 0 comments
Open

call rate filter #288

1teaspoon opened this issue May 16, 2024 · 0 comments
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@kliao12

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@1teaspoon
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Currently at call rate filter step the qc pipeline filters low call rate samples first and then filters low call rate loci
We would like to change this process to first filter low call rate loci and then filter low call rate samples.
@kliao12 kliao12 self-assigned this Jun 12, 2024
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@kliao12 kliao12

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288-call-rate-filter NCI-CGR/GwasQcPipeline
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@kliao12 @1teaspoon