Skip to content

Commit

Permalink
deploy: 3b99ce7
Browse files Browse the repository at this point in the history
  • Loading branch information
haesleinhuepf committed Dec 1, 2023
1 parent daa9c97 commit 0d1268a
Show file tree
Hide file tree
Showing 55 changed files with 249 additions and 216 deletions.
2 changes: 1 addition & 1 deletion _sources/readme.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# NFDI4BioImage Training Materials

This Jupyter Book contains 217 links to training materials in the context Research Data Management for Bioimaging / Microscopy Data and Bio-image Analysis and has been updated 2023-11-19.
This Jupyter Book contains 218 links to training materials in the context Research Data Management for Bioimaging / Microscopy Data and Bio-image Analysis and has been updated 2023-12-01.

This is a **preliminary** / **experimental** search index allowing us to explore how such a database could look like. We follow the principle [_release early, release often_](https://en.wikipedia.org/wiki/Release_early,_release_often) and aim at having a functional prototype of the search index at any time. We will use this resource to
* explore what kind of meta-data we need to collect for training materials
Expand Down
17 changes: 16 additions & 1 deletion _sources/tags/omero.md
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Omero (11)
# Omero (12)
## Browsing the Open Microscopy Image Data Resource with Python

Robert Haase
Expand Down Expand Up @@ -178,3 +178,18 @@ Content type: collection, video

---

## User friendly Image metadata annotation tool/workflow for OMERO

Jens Wendt



Tags: metadata, workflow, OMERO

Content type: forum post

[https://forum.image.sc/t/user-friendly-image-metadata-annotation-tool-workflow-for-omero/87925/1](https://forum.image.sc/t/user-friendly-image-metadata-annotation-tool-workflow-for-omero/87925/1)


---

8 changes: 4 additions & 4 deletions authors/christian_tischer.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1257,7 +1257,7 @@ <h2>i2k-2020-s3-zarr-workshop<a class="headerlink" href="#i2k-2020-s3-zarr-works

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/constantin_pape.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1160,7 +1160,7 @@ <h2>i2k-2020-s3-zarr-workshop<a class="headerlink" href="#i2k-2020-s3-zarr-works

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/et_al..html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1179,7 +1179,7 @@ <h2>NEUBIAS Bioimage Analyst School 2020<a class="headerlink" href="#neubias-bio

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/guillaume_witz.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1202,7 +1202,7 @@ <h2>numpy pandas course<a class="headerlink" href="#numpy-pandas-course" title="

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/josh_moore.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1163,7 +1163,7 @@ <h2>SpatialData: an open and universal data framework for spatial omics<a class=

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/kota_miura.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1259,7 +1259,7 @@ <h2>What is Bioimage Analysis? An Introduction<a class="headerlink" href="#what-

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/mara_lampert.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1158,7 +1158,7 @@ <h2>Tracking in napari<a class="headerlink" href="#tracking-in-napari" title="Pe

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/martin_weigert.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1182,7 +1182,7 @@ <h2>Neubias Academy 2020: Introduction to Nuclei Segmentation with StarDist<a cl

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/readme.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1046,7 +1046,7 @@ <h2> Contents </h2>

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
8 changes: 4 additions & 4 deletions authors/robert_haase.html
Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -519,7 +519,7 @@

<li class="nav-item">
<a class="nav-link nav-internal" href="../tags/omero.html">
Omero (11)
Omero (12)
</a>
</li>

Expand Down Expand Up @@ -776,7 +776,7 @@
<li class="toctree-l1"><a class="reference internal" href="../tags/napari.html">Napari (7)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/neubias.html">Neubias (25)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/nfdi4bioimage.html">Nfdi4bioimage (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (11)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/omero.html">Omero (12)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/python.html">Python (48)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/research_data_management.html">Research data management (34)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tags/sharing.html">Sharing (6)</a></li>
Expand Down Expand Up @@ -1593,7 +1593,7 @@ <h2>Working with pixels<a class="headerlink" href="#working-with-pixels" title="

<div class="footer-item">
<p class="last-updated">
Last updated on 2023-11-19.<br>
Last updated on 2023-12-01.<br>
</p>
</div>

Expand Down
Loading

0 comments on commit 0d1268a

Please sign in to comment.