fix: [nmrkit]-update namespace and repo

charts/nmr-predict/Chart.yaml → charts/nmrkit/Chart.yaml

@@ -1,6 +1,6 @@
 apiVersion: v2
-name: nmr-predict
-description: A Helm chart for nmr-predict service.
+name: nmrkit
+description: A Helm chart for nmrkit service.
 maintainers:
   - name: Nisha Sharma
     email: nisha.sharma@uni-jena.de
@@ -18,7 +18,7 @@ type: application
 # This is the chart version. This version number should be incremented each time you make changes
 # to the chart and its templates, including the app version.
 # Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.2
+version: 0.1.3
 
 # This is the version number of the application being deployed. This version number should be
 # incremented each time you make changes to the application. Versions are not expected to

charts/nmr-predict/templates/NOTES.txt → charts/nmrkit/templates/NOTES.txt

@@ -6,16 +6,16 @@
   {{- end }}
 {{- end }}
 {{- else if contains "NodePort" .Values.service.type }}
-  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "nmr-predict.fullname" . }})
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "nmrkit.fullname" . }})
   export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
   echo http://$NODE_IP:$NODE_PORT
 {{- else if contains "LoadBalancer" .Values.service.type }}
      NOTE: It may take a few minutes for the LoadBalancer IP to be available.
-           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "nmr-predict.fullname" . }}'
-  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "nmr-predict.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "nmrkit.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "nmrkit.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
   echo http://$SERVICE_IP:{{ .Values.service.port }}
 {{- else if contains "ClusterIP" .Values.service.type }}
-  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "nmr-predict.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "nmrkit.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
   export CONTAINER_PORT=$(kubectl get pod --namespace {{ .Release.Namespace }} $POD_NAME -o jsonpath="{.spec.containers[0].ports[0].containerPort}")
   echo "Visit http://127.0.0.1:8080 to use your application"
   kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:$CONTAINER_PORT

charts/nmr-predict/templates/deployment.yaml → charts/nmrkit/templates/deployment.yaml

@@ -1,30 +1,30 @@
 apiVersion: apps/v1
 kind: Deployment
 metadata:
-  name: {{ include "nmr-predict.fullname" . }}
+  name: {{ include "nmrkit.fullname" . }}
   labels:
-    {{- include "nmr-predict.labels" . | nindent 4 }}
+    {{- include "nmrkit.labels" . | nindent 4 }}
 spec:
   {{- if not .Values.autoscaling.enabled }}
   replicas: {{ .Values.replicaCount }}
   {{- end }}
   selector:
     matchLabels:
-      {{- include "nmr-predict.selectorLabels" . | nindent 6 }}
+      {{- include "nmrkit.selectorLabels" . | nindent 6 }}
   template:
     metadata:
       {{- with .Values.podAnnotations }}
       annotations:
         {{- toYaml . | nindent 8 }}
       {{- end }}
       labels:
-        {{- include "nmr-predict.selectorLabels" . | nindent 8 }}
+        {{- include "nmrkit.selectorLabels" . | nindent 8 }}
     spec:
       {{- with .Values.imagePullSecrets }}
       imagePullSecrets:
         {{- toYaml . | nindent 8 }}
       {{- end }}
-      serviceAccountName: {{ include "nmr-predict.serviceAccountName" . }}
+      serviceAccountName: {{ include "nmrkit.serviceAccountName" . }}
       securityContext:
         {{- toYaml .Values.podSecurityContext | nindent 8 }}
       containers:

charts/nmr-predict/templates/hpa.yaml → charts/nmrkit/templates/hpa.yaml

@@ -2,14 +2,14 @@
 apiVersion: autoscaling/v2beta1
 kind: HorizontalPodAutoscaler
 metadata:
-  name: {{ include "nmr-predict.fullname" . }}
+  name: {{ include "nmrkit.fullname" . }}
   labels:
-    {{- include "nmr-predict.labels" . | nindent 4 }}
+    {{- include "nmrkit.labels" . | nindent 4 }}
 spec:
   scaleTargetRef:
     apiVersion: apps/v1
     kind: Deployment
-    name: {{ include "nmr-predict.fullname" . }}
+    name: {{ include "nmrkit.fullname" . }}
   minReplicas: {{ .Values.autoscaling.minReplicas }}
   maxReplicas: {{ .Values.autoscaling.maxReplicas }}
   metrics:

charts/nmr-predict/templates/ingress.yaml → charts/nmrkit/templates/ingress.yaml

@@ -1,5 +1,5 @@
 {{- if .Values.ingress.enabled -}}
-{{- $fullName := include "nmr-predict.fullname" . -}}
+{{- $fullName := include "nmrkit.fullname" . -}}
 {{- $svcPort := .Values.service.port -}}
 {{- if and .Values.ingress.className (not (semverCompare ">=1.18-0" .Capabilities.KubeVersion.GitVersion)) }}
   {{- if not (hasKey .Values.ingress.annotations "kubernetes.io/ingress.class") }}
@@ -17,7 +17,7 @@ kind: Ingress
 metadata:
   name: {{ $fullName }}
   labels:
-    {{- include "nmr-predict.labels" . | nindent 4 }}
+    {{- include "nmrkit.labels" . | nindent 4 }}
   {{- with .Values.ingress.annotations }}
   annotations:
     {{- toYaml . | nindent 4 }}

charts/nmr-predict/templates/service.yaml → charts/nmrkit/templates/service.yaml

@@ -1,9 +1,9 @@
 apiVersion: v1
 kind: Service
 metadata:
-  name: {{ include "nmr-predict.fullname" . }}
+  name: {{ include "nmrkit.fullname" . }}
   labels:
-    {{- include "nmr-predict.labels" . | nindent 4 }}
+    {{- include "nmrkit.labels" . | nindent 4 }}
 spec:
   type: {{ .Values.service.type }}
   ports:
@@ -12,4 +12,4 @@ spec:
       protocol: TCP
       name: http
   selector:
-    {{- include "nmr-predict.selectorLabels" . | nindent 4 }}
+    {{- include "nmrkit.selectorLabels" . | nindent 4 }}

charts/nmr-predict/templates/serviceaccount.yaml → charts/nmrkit/templates/serviceaccount.yaml

@@ -2,9 +2,9 @@
 apiVersion: v1
 kind: ServiceAccount
 metadata:
-  name: {{ include "nmr-predict.serviceAccountName" . }}
+  name: {{ include "nmrkit.serviceAccountName" . }}
   labels:
-    {{- include "nmr-predict.labels" . | nindent 4 }}
+    {{- include "nmrkit.labels" . | nindent 4 }}
   {{- with .Values.serviceAccount.annotations }}
   annotations:
     {{- toYaml . | nindent 4 }}

charts/nmrkit/templates/tests/test-connection.yaml

@@ -0,0 +1,15 @@
+apiVersion: v1
+kind: Pod
+metadata:
+  name: "{{ include "nmrkit.fullname" . }}-test-connection"
+  labels:
+    {{- include "nmrkit.labels" . | nindent 4 }}
+  annotations:
+    "helm.sh/hook": test
+spec:
+  containers:
+    - name: wget
+      image: busybox
+      command: ['wget']
+      args: ['{{ include "nmrkit.fullname" . }}:{{ .Values.service.port }}']
+  restartPolicy: Never

charts/nmr-predict/values.yaml → charts/nmrkit/values.yaml

@@ -5,9 +5,8 @@
 replicaCount: 1
 
 image:
-  name: nmr-predict
-  repository: nmr-predict
-  repository: europe-west3-docker.pkg.dev/nmrxiv/nmrxiv-dev/nmr-predict
+  name: nmrkit
+  repository: nfdi4chem/nmrkit:dev-latest
   pullPolicy: Always
   # Overrides the image tag whose default is the chart appVersion.
   tag: latest