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0.3.5 #345

Merged
merged 23 commits into from
Jul 16, 2024
Merged

0.3.5 #345

merged 23 commits into from
Jul 16, 2024

Commits on Jun 18, 2024

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Commits on Jun 26, 2024

  1. Bug fix: cv utility functions

    - attach_xy: Retaining all columns
    - generate_cv_index: Retaining all columns
    sigmafelix committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. update

    - following amadeus changes (process_blackmarble)
    - New GPU-enabled R torch library binding
    sigmafelix committed Jun 27, 2024
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  2. set_args_calc

    - path setting is changed to if-else
    - pipeline error failing mode to "abridge"
    sigmafelix committed Jun 27, 2024
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  3. path fix + inject_geos fix

    - removing irrelevant arguments passed to terra::rast
    sigmafelix committed Jun 27, 2024
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Commits on Jul 1, 2024

  1. impute_all update

    sigmafelix committed Jul 1, 2024
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Commits on Jul 2, 2024

  1. 0.3.2

    - Internal functions are not exported
    - attach_xy logic fix: join to the "grand" data rather than the leaned one
    - fit_base_brulee and fit_base_xgb: added device to manually distribute GPU workload
    sigmafelix committed Jul 2, 2024
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  2. 0.3.2 update

    - Branching base learner fitting
    sigmafelix committed Jul 2, 2024
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  3. typo fix

    sigmafelix committed Jul 2, 2024
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Commits on Jul 3, 2024

  1. wrapper: prepare_cvindex

    - shared interface for branching cv set generation
    sigmafelix committed Jul 3, 2024
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Commits on Jul 7, 2024

  1. 0.3.3

    - Pipeline base learner: 3 CV strategies and hyperparameter tuning targets were added
    - fit_base_* function get `return_best` and `tune_bayes_iter` for `workflow` compatibility
    - prepare_cvindex assigns fold ids using function names when spatialsample functions are used
    - restore_rset_full: as speed-up and disk saving measures
      - rset objects are generated based on essential coordinates only; this function restores full data for subsequent steps
    - TODO: size issues persist in hyperparamter tuning and identifying the best model as the entire workflow should be saved. rsample always saves training/test data.
    - TODO: duplicates in features; identify where the duplicates come
    sigmafelix committed Jul 7, 2024
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Commits on Jul 8, 2024

  1. 0.3.4

    - Data size reduction for memory / storage management: added trim_resamples argument in fit_base_*
    - make_subdata: bootstrapping (currently 30%)
    - restore_fit_best: restore full data with CV rsample rset objects, extract the best tuned results, then fit the data
      - Dealing with nested list in tibbles from tidymodels workflow/hyperparameter tuning
      - TODO/Q: Do we save fitted model object or just keep predictions?
    sigmafelix committed Jul 8, 2024
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  2. 0.3.4 update

    - set_args_download and feature_raw_download are written
    - targets_download.R is revised to reflect the structure of the two functions
    sigmafelix committed Jul 8, 2024
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Commits on Jul 9, 2024

  1. 0.3.5

    - Base learner: lightgbm
    - Added dependencies: bonsai, lightgbm
    - Explicit definition of hyperparameter search controls for each
    sigmafelix committed Jul 9, 2024
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Commits on Jul 15, 2024

  1. set_args_download update + write permission test

    - LICENSE file gets 554
    sigmafelix committed Jul 15, 2024
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  2. post-checkout hook

    - set_args_download update
    - _targets.R update to generate arglist_download
    sigmafelix committed Jul 15, 2024
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  3. another try

    sigmafelix committed Jul 15, 2024
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  4. hook update

    sigmafelix committed Jul 15, 2024
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  5. Instruction to setup hooks

    - README.md update
    - setup_hook.sh is capable of immediately activating permission change
    sigmafelix committed Jul 15, 2024
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Commits on Jul 16, 2024

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  2. Lint and typo fix

    - targets_download.R: duplicate target names
    - Roxygen2 documentation typo fix in fit_base_lightgbm
    sigmafelix committed Jul 16, 2024
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