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Swarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.
example singularity definition files and demos
Python Interface to Slurm
Tool for running/managing ad hoc spark clusters on a Slurm cluster
base documentation site for Singularity software
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
Translate PBS batch scripts to Slurm
Class materials for the NIH HPC snakemake class
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Ximmer is a system for CNV calling on exome and targeted genomic sequencing
Materials for 3 hour hands-on workshop entitled "Creating and running software containers with Singularity"
Materials for a Python in HPC class
Singularity: Application containers for Linux
HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
Add GPU support to your Singularity container!
Image-processing software for cryo-electron microscopy