#Data available from https://zenodo.org/record/1293774
wget https://zenodo.org/record/1293774/files/md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v1_100-200ns.xtc wget https://zenodo.org/record/1293774/files/for-md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v1.tpr wget https://zenodo.org/record/1293774/files/md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v1.gro wget https://zenodo.org/record/1293774/files/md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v2_100-200ns.xtc #wget https://zenodo.org/record/1293774/files/for-md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v2.tpr
cp md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v1_100-200ns.xtc traj.xtc mv for-md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v1.tpr topol.tpr mv md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v1.gro conf.gro
cp ../../../../../scripts/orderParm_defs/order_parameter_definitions_MODEL_CHARMM36ua_POPE.def defFILE.def sh ../../../../../scripts/order_parameters_calculate.sh mv OrdPars.dat OrdParsPOPE_rep_1.dat
rm traj_pbc.xtc cp md_POPE_hexagonal_membrane_CHARMM36_UA_200ns_v2_100-200ns.xtc traj.xtc sh ../../../../../scripts/order_parameters_calculate.sh mv OrdPars.dat OrdParsPOPE_rep_2.dat
paste OrdParsPOPE_rep_1.dat OrdParsPOPE_rep_2.dat | awk -f ../../../../../scripts/averageOVERdata.awk