use mu71 with ktherm=1 #25
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JessicaMeixner-NOAA
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Aug 12, 2020
JianKuang-Intelsat
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* Pointing to v3.1 tag for ufs-s2s-model making readme consistant with user.yaml.default * bug fix, POSTGRB2TBL undefined * Squashing commits to wave2global * Fix to JWAVE_PREP to look back a day for rtofs * Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. * Clean up exwave_post_sbs * clean up unused schema move default value into defaults/ * move all default values into /defaults from /schema It's better if we have one place to manage default values for configurable variables other than two Default values only for reference. Please throughly test to make sure it could reproduce. * model_configure_DATM * merge in the latest revision from IPD work * add stoch variables to config.fcst scripts update: CCPP and IPD works * capital case CDUMP values in config.fv3 * stochy variable namelist update, add hard-coded variables into config.fcst (fcst.yaml) * OCNTIM and ICETIM are included in config.fv3 ice variable istep0 bug fix * stochastic variables update * delete falseful copy after namelist and model_configure parsing add FNMSKH conditional clause, coupled vs non-coupled * update on sandbox platform, for FIX_SCRUB settings * turn off stochastic features in case file * configuration update for CCPP scripts * generalize fix file directory for imp_physics 8 * reiflag default value changed to 1 * port to Orion * remove HERA-like paths in platform.yaml of Orion * checkout and External.cfg update * update checkout and External.cfg * case file adjustment for Orion IC * expand gitignore * automate fix file linking, to this location: /work/noaa/marine/jmeixner/tempFixICdir/fix/fix_prep_benchmark3 * updates to checkout, build and link to run prototype 4 * update UPP version to v1.0.8 * making Externals_coupled.cfg consistent with checkout.sh * removing fix from .gitignore * fixed error when linking on hera * replace MOM6IC with BASE_CPLIC for base directory location of IC for s2s model and made it platform dependent. (Orion location is temporary and needs to be replaced, can also be changed in cases/coupled_free_forecast.yaml to users prefered location) * updates for copying ICs * more updates for ICs * updates for new fix (which includes prep for multiple resolutions) and some clean-up * renaming exe to reflect updated build * update diag_table for ocean * updates for ice_in to match prototype 4 * updates for CCPP suite used in p4 * making a fix dir of all available ccpp suite files copying suite xml file to rundirectory * updating for reorganized tar files, pulling in changes from wcoss-p2 workflow * last of archive updates for p4 * updating module files to match s2s model and ncep post modules * we don't want to cycle/have 4 runs per day so setting the cases to be just 1 IC * updating module files on hera * updates to readme for orion * mediator cold start succeeds on hera and forecast job starts post jobs for atmosphere are no longer triggered on cold starts * adding ncks, updating ocean post, some fixes for tar files * updates for tar files and do not keep data * fix typo * updating module_base.orion that allows cold start to run. Not sure if other jobs will now fail though or if what is in your .bashrc file will effect the success/failure of the run. * both forecast and atm post seem to be running okay on orion * wave configuration files * wave configuration update * fix module-setup.sh.inc script, which causes module purge unsuccessful * 1, Moved some of the variables into configuration system from JWAVE scripts 2, Wave configuration system built out 3, Modularized scripts updated to accomodate wave variables * Fix suite name of CCPP Move cplwav and cplwav2atm variable * Revise CCPP_SUITE variable name, default option, to "IPD" * wave post-process job update * reg2grb2 for test on feature coupled-crow * orion hera build test * reg2grb2 Build on Hera and Orion * Merged and ready for test * add ocn-ice build to readme * adding updates to wave scripts from gfsv16b branch by @ajhenrique * cleaning up double cplwav * changes to wave case * bugfix in layout file * bug fix in layout file * move OCNPETS, ICEPETS and WAVEPETS into dedicated model-specific sessions instead of fv3_gfs_settings * first try for adding wave ICs * fix bugs in config.wave and coupled_ic.sh * updates for wave defaults for s2s p4 * updates for running wave jobs * point WW3-related executables through HOMEgfs/fv3_coupled.fd/exec * ocean post hours at boundary are processed twice, now fixed. * wave init job now works on hera * adding missing file from last commit * add ocean, ice and wave configurable variables * add ocean, ice and wave configurable variables * put ic type variable into config.fv3ic * wave init now works on orion * updates to run wave prep for s2s case * updating forecast job for wave jobs * updates for forecast with waves * at this point the ocean post is now running * fix nems.configure for cold start * updated wave-realted scripts to match gfsv16 branch updated environment files env/ORION.env updated configuration system * add waves to jglobal forecast config * updates - everything but wave post seems to run now, part of wave post does updating model to latest tag * change for lmod -> lmod/lmod on orion updated README * fixing syntax error in JWAVE_PREP job for variables that are not actively being used * adding cycle definition to wave post job * cleanup from duplications * updating build to work with CMEPS * updates for wave post jobs - changing exe dir location * updates of an lmod->lmod/lmod update to build of fv3_coupled * reg2grb2 now builds on orion * add note to use rocoto/1.3.2 on orion as this version has fix for the UNAVAILABLE issue * adding nems.configure to the log file * updating ice_in see NOAA-EMC/CICE5#25 * updates for nems.configure for running with CMEPS * adding MED pets so that they only use the forecast not write grid pets * updates for CMEPS mediator * add pointer to which mediator restart for cmeps * final updates to make cmeps forecasts run * corrections on E-P calculation in regdiag.f * (1) set IC dir path as /work/noaa/marine/Partha.Bhattacharjee/IC_Dir in workflow/platforms/orion.yaml (2) add extra white space in ush/nems_configure.sh in line 56 to eliminate warning in run log (3) correction on restart_n template variable setting in ush/nems.configure.med_atm_ocn_ice.IN * cleanup * updating MOM6 for restart parameter to be false * add extra two ice variables in ush/parsing_namelists_CICE.sh Co-authored-by: Jessica.Meixner <Jessica.Meixner@noaa.gov> Co-authored-by: jian.kuang <Jian.Kuang@noaa.gov> Co-authored-by: Henrique Alves <henrique.alves@noaa.gov> Co-authored-by: kate.friedman <kate.friedman@noaa.gov> Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Co-authored-by: Lin.Gan <lin.gan@noaa.gov> Co-authored-by: JianKuang-NOAA <51758200+JianKuang-NOAA@users.noreply.github.com>
WalterKolczynski-NOAA
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Jan 13, 2021
…kflow into feature/port_coupled_wcoss_dell * 'feature/coupled-crow' of github.com:NOAA-EMC/global-workflow: Feature/gfsv16intocoupled (NOAA-EMC#194) feature/coupled-crow fractional grid (NOAA-EMC#218) updating module file so that atm pos will work (NOAA-EMC#214) feature/coupled-crow updating to use latest ups-weather (NOAA-EMC#210) feature/coupled-crow: Updates for consistency (NOAA-EMC#199) modify modulefile.reg2grb2.orion, modulefile.reg2grb2.hera and build_reg2grb2.sh to use hpc-stack library update readme to current wave post status rest of post jobs that should have been committed at this point, the post jobs for the waves post run, but the gridded grib2 files are not correct modifications for wave jobs after updating to be closer to v16 wave scripts but work for feature/coupled-crow update ENV files for wave jobs update wave jobs updates from gfsv16b-waves add correct path to wave exe remove exit update ww3 build script add building of WW3 pre and prep jobs currently requires extra module files (can be removed when base uses hpc-stack) update for module files on orion and adding building of wave prep updating scrip files for waves to match gfsv16b updating ush files for waves to match gfsv16b (includes restructure) cleanup (1) set IC dir path as /work/noaa/marine/Partha.Bhattacharjee/IC_Dir in workflow/platforms/orion.yaml (2) add extra white space in ush/nems_configure.sh in line 56 to eliminate warning in run log (3) correction on restart_n template variable setting in ush/nems.configure.med_atm_ocn_ice.IN corrections on E-P calculation in regdiag.f final updates to make cmeps forecasts run add pointer to which mediator restart for cmeps updates for CMEPS mediator adding MED pets so that they only use the forecast not write grid pets updates for nems.configure for running with CMEPS updating ice_in see NOAA-EMC/CICE5#25 adding nems.configure to the log file add note to use rocoto/1.3.2 on orion as this version has fix for the UNAVAILABLE issue reg2grb2 now builds on orion updates of an lmod->lmod/lmod update to build of fv3_coupled updates for wave post jobs - changing exe dir location updating build to work with CMEPS cleanup from duplications adding cycle definition to wave post job fixing syntax error in JWAVE_PREP job for variables that are not actively being used change for lmod -> lmod/lmod on orion updated README updates - everything but wave post seems to run now, part of wave post does updating model to latest tag add waves to jglobal forecast config updated wave-realted scripts to match gfsv16 branch updated environment files env/ORION.env updated configuration system fix nems.configure for cold start at this point the ocean post is now running updates for forecast with waves updating forecast job for wave jobs updates to run wave prep for s2s case wave init now works on orion put ic type variable into config.fv3ic add ocean, ice and wave configurable variables add ocean, ice and wave configurable variables adding missing file from last commit wave init job now works on hera ocean post hours at boundary are processed twice, now fixed. point WW3-related executables through HOMEgfs/fv3_coupled.fd/exec updates for running wave jobs updates for wave defaults for s2s p4 fix bugs in config.wave and coupled_ic.sh first try for adding wave ICs move OCNPETS, ICEPETS and WAVEPETS into dedicated model-specific sessions instead of fv3_gfs_settings bug fix in layout file bugfix in layout file changes to wave case cleaning up double cplwav adding updates to wave scripts from gfsv16b branch by @ajhenrique add ocn-ice build to readme Merged and ready for test reg2grb2 Build on Hera and Orion orion hera build test reg2grb2 for test on feature coupled-crow wave post-process job update Revise CCPP_SUITE variable name, default option, to "IPD" Fix suite name of CCPP Move cplwav and cplwav2atm variable 1, Moved some of the variables into configuration system from JWAVE scripts 2, Wave configuration system built out 3, Modularized scripts updated to accomodate wave variables fix module-setup.sh.inc script, which causes module purge unsuccessful wave configuration update wave configuration files both forecast and atm post seem to be running okay on orion updating module_base.orion that allows cold start to run. Not sure if other jobs will now fail though or if what is in your .bashrc file will effect the success/failure of the run. fix typo updates for tar files and do not keep data adding ncks, updating ocean post, some fixes for tar files mediator cold start succeeds on hera and forecast job starts post jobs for atmosphere are no longer triggered on cold starts updates to readme for orion updating module files on hera we don't want to cycle/have 4 runs per day so setting the cases to be just 1 IC updating module files to match s2s model and ncep post modules last of archive updates for p4 updating for reorganized tar files, pulling in changes from wcoss-p2 workflow making a fix dir of all available ccpp suite files copying suite xml file to rundirectory updates for CCPP suite used in p4 updates for ice_in to match prototype 4 update diag_table for ocean renaming exe to reflect updated build updates for new fix (which includes prep for multiple resolutions) and some clean-up more updates for ICs updates for copying ICs replace MOM6IC with BASE_CPLIC for base directory location of IC for s2s model and made it platform dependent. (Orion location is temporary and needs to be replaced, can also be changed in cases/coupled_free_forecast.yaml to users prefered location) fixed error when linking on hera removing fix from .gitignore making Externals_coupled.cfg consistent with checkout.sh update UPP version to v1.0.8 updates to checkout, build and link to run prototype 4 automate fix file linking, to this location: /work/noaa/marine/jmeixner/tempFixICdir/fix/fix_prep_benchmark3 expand gitignore case file adjustment for Orion IC update checkout and External.cfg checkout and External.cfg update remove HERA-like paths in platform.yaml of Orion port to Orion reiflag default value changed to 1 generalize fix file directory for imp_physics 8 configuration update for CCPP scripts turn off stochastic features in case file update on sandbox platform, for FIX_SCRUB settings delete falseful copy after namelist and model_configure parsing add FNMSKH conditional clause, coupled vs non-coupled stochastic variables update OCNTIM and ICETIM are included in config.fv3 ice variable istep0 bug fix stochy variable namelist update, add hard-coded variables into config.fcst (fcst.yaml) capital case CDUMP values in config.fv3 add stoch variables to config.fcst scripts update: CCPP and IPD works merge in the latest revision from IPD work model_configure_DATM move all default values into /defaults from /schema clean up unused schema move default value into defaults/ Clean up exwave_post_sbs Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. Fix to JWAVE_PREP to look back a day for rtofs Squashing commits to wave2global bug fix, POSTGRB2TBL undefined Pointing to v3.1 tag for ufs-s2s-model making readme consistant with user.yaml.default
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The setting for conduc should be MU71 when ktherm=1 is used (ie, not mushy thermodynamics). Currently in emc-cice5, conduc has been left at "bubbly". This information has been provided by Dave Bailey @ ncar.
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