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Bugfix on Broken GHRSST Ioda Converter #1004

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merged 5 commits into from
Mar 29, 2024
Merged

Bugfix on Broken GHRSST Ioda Converter #1004

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9726741
fix a bug when no datetime
apchoiCMD Mar 28, 2024
9cd8180
add new sub-samples
apchoiCMD Mar 28, 2024
613633a
Merge branch 'develop' into bugfix/ghrsst_datetime_count
apchoiCMD Mar 28, 2024
fe00ff4
typo
apchoiCMD Mar 28, 2024
4429a4b
Merge branch 'develop' into bugfix/ghrsst_datetime_count
apchoiCMD Mar 29, 2024
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5 changes: 3 additions & 2 deletions utils/obsproc/Ghrsst2Ioda.h
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Original file line number Diff line number Diff line change
Expand Up @@ -184,7 +184,8 @@ namespace gdasapp {
}
}
// Calculate the average and store datetime
int64_t seconds_s = static_cast<int64_t>(sum / count);
// Replace the seconds_s to 0 when count is zero
int64_t seconds_s = count != 0 ? static_cast<int64_t>(sum / count) : 0;
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// number of obs after subsampling
int nobs = sst_s.size() * sst_s[0].size();
Expand Down Expand Up @@ -220,7 +221,7 @@ namespace gdasapp {

// Basic QC
Eigen::Array<bool, Eigen::Dynamic, 1> boundsCheck =
(iodaVars.obsVal_ > sstMin && iodaVars.obsVal_ < sstMax);
(iodaVars.obsVal_ > sstMin && iodaVars.obsVal_ < sstMax && iodaVars.datetime_ > 0.0);
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iodaVars.trim(boundsCheck);

return iodaVars;
Expand Down
4 changes: 2 additions & 2 deletions utils/test/prepdata.sh
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Expand Up @@ -27,7 +27,7 @@ cdl2nc4 sss_smap_1.nc4 ${project_source_dir}/testdata/sss_smap_1.cdl
cdl2nc4 sss_smap_2.nc4 ${project_source_dir}/testdata/sss_smap_2.cdl
cdl2nc4 sss_smos_1.nc4 ${project_source_dir}/testdata/sss_smos_1.cdl
cdl2nc4 sss_smos_2.nc4 ${project_source_dir}/testdata/sss_smos_2.cdl
cdl2nc4 ghrsst_sst_mb_202107010000.nc4 ${project_source_dir}/testdata/ghrsst_sst_mb_202107010000.cdl
cdl2nc4 ghrsst_sst_mb_202107010100.nc4 ${project_source_dir}/testdata/ghrsst_sst_mb_202107010100.cdl
cdl2nc4 ghrsst_sst_ma_202103241540.nc4 ${project_source_dir}/testdata/ghrsst_sst_ma_202103241540.cdl
cdl2nc4 ghrsst_sst_ma_202103241550.nc4 ${project_source_dir}/testdata/ghrsst_sst_ma_202103241550.cdl
cdl2nc4 viirs_aod_1.nc4 ${project_source_dir}/testdata/viirs_aod_1.cdl
cdl2nc4 viirs_aod_2.nc4 ${project_source_dir}/testdata/viirs_aod_2.cdl
158 changes: 74 additions & 84 deletions ...t/testdata/ghrsst_sst_mb_202107010100.cdl → ...t/testdata/ghrsst_sst_ma_202103241540.cdl
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@@ -1,8 +1,8 @@
netcdf sst_MB_202107010100 {
netcdf ghrsst_sst_ma_202103241540 {
dimensions:
time = 1 ;
lat = 6 ;
lon = 11 ;
lat = 5 ;
lon = 10 ;
variables:
int crs ;
crs:grid_mapping_name = "latitude_longitude" ;
Expand Down Expand Up @@ -153,29 +153,29 @@ variables:
:creator_email = "Alex.Ignatov@noaa.gov" ;
:creator_name = "Alex Ignatov" ;
:creator_url = "http://www.star.nesdis.noaa.gov" ;
:date_created = "20210701T021440Z" ;
:date_created = "20210324T180341Z" ;
:easternmost_longitude = -179.98f ;
:file_quality_level = 2 ;
:gds_version_id = "02.0" ;
:geospatial_lat_max = 89.f ;
:geospatial_lat_min = 52.9f ;
:geospatial_lat_min = 55.78f ;
:geospatial_lat_resolution = 0.02f ;
:geospatial_lat_units = "degrees_north" ;
:geospatial_lon_max = -179.98f ;
:geospatial_lon_min = -180.f ;
:geospatial_lon_resolution = 0.02f ;
:geospatial_lon_units = "degrees_east" ;
:history = "Thu Oct 5 16:24:08 2023: ncks -d lon,16555,16565 -d lat,1664,1669 /scratch1/NCEPDEV/stmp4/Shastri.Paturi/forAndrew/gdas.20210701/00/sst/20210701010000-OSPO-L3U_GHRSST-SSTsubskin-AVHRRF_MB-ACSPO_V2.70-v02.0-fv01.0.nc sst_MB_202107010100.nc\nCreated by the L2P-to-L3U conversion tool, which was developed and provided by NOAA/NESDIS/STAR and CCNY. The version is 4.1.5" ;
:id = "AVHRRF_MB-OSPO-L3U-v2.7" ;
:history = "Thu Mar 28 17:03:57 2024: ncks -d lon,11826,11835 -d lat,602,606 /scratch1/NCEPDEV/global/glopara/data/experimental_obs/gdas.20210324/18/ocean/sst/20210324154000-OSPO-L3U_GHRSST-SSTsubskin-AVHRRF_MA-ACSPO_V2.70-v02.0-fv01.0.nc ghrsst_sst_ma_202103241540.nc\nCreated by the L2P-to-L3U conversion tool, which was developed and provided by NOAA/NESDIS/STAR and CCNY. The version is 4.1.5" ;
:id = "AVHRRF_MA-OSPO-L3U-v2.7" ;
:institution = "NOAA/NESDIS/OSPO" ;
:keywords = "Oceans > Ocean Temperature > Sea Surface Temperature" ;
:keywords_vocabulary = "NASA Global Change Master Directory (GCMD) Science Keywords" ;
:license = "GHRSST protocol describes data use as free and open" ;
:metadata_link = "http://podaac.jpl.nasa.gov/ws/metadata/dataset/?format=iso&shortName=AVHRRF_MB-OSPO-L2P-v2.7" ;
:metadata_link = "http://podaac.jpl.nasa.gov/ws/metadata/dataset/?format=iso&shortName=AVHRRF_MA-OSPO-L2P-v2.7" ;
:naming_authority = "org.ghrsst" ;
:netcdf_version_id = "4.5.0 of Jul 23 2018 18:00:31 $" ;
:northernmost_latitude = 89.f ;
:platform = "MetOpB" ;
:platform = "MetOpA" ;
:processing_level = "L3U" ;
:product_version = "L2P algorithm V2.70; L3U algorithm V4.1.5" ;
:project = "Group for High Resolution Sea Surface Temperature" ;
Expand All @@ -184,113 +184,103 @@ variables:
:publisher_url = "http://www.ghrsst.org" ;
:references = "Data convention: GHRSST Data Specification (GDS) v2.0. Algorithms: ACSPO-AVHRR ATBD (NOAA/NESDIS/OSPO)" ;
:sensor = "AVHRR" ;
:source = "l2p_source : 20210701010000-OSPO-L2P_GHRSST-SSTsubskin-AVHRRF_MB-ACSPO_V2.70-v02.0-fv01.0.nc" ;
:southernmost_latitude = 52.9f ;
:source = "l2p_source : 20210324154000-OSPO-L2P_GHRSST-SSTsubskin-AVHRRF_MA-ACSPO_V2.70-v02.0-fv01.0.nc" ;
:southernmost_latitude = 55.78f ;
:spatial_resolution = "0.02 deg" ;
:standard_name_vocabulary = "CF Standard Name Table (v26, 08 November 2013)" ;
:start_time = "20210701T010000Z" ;
:stop_time = "20210701T010959Z" ;
:start_time = "20210324T154000Z" ;
:stop_time = "20210324T154959Z" ;
:summary = "Sea surface temperature retrievals produced by NOAA/NESDIS/OSPO office from AVHRR sensor" ;
:time_coverage_end = "20210701T010959Z" ;
:time_coverage_start = "20210701T010000Z" ;
:time_coverage_end = "20210324T154959Z" ;
:time_coverage_start = "20210324T154000Z" ;
:title = "AVHRR L3U SST" ;
:uuid = "02508803-88b0-49c3-8a26-5a4a0f33099a" ;
:uuid = "3a3ffd4f-5384-44c1-900a-d584809ad036" ;
:westernmost_longitude = -180.f ;
:sst_luts = "LUT_AVHRRF_MB_L2P_DEPTH_DAY_V01.01_20180507.txt, LUT_AVHRRF_MB_L2P_SKIN_DAYNIGHT_V01.00_20180408.txt, LUT_AVHRRF_MB_L2P_DEPTH_NIGHT_V01.01_20180507.txt, LUT_AVHRRF_MB_L2P_SKIN_NIGHT_V01.00_20180408.txt" ;
:geospatial_bounds = "POLYGON(( 114.037 60.830, -12.301 83.131, -127.738 67.699, 160.334 52.991, 114.037 60.830))" ;
:sst_luts = "LUT_AVHRRF_MA_L2P_DEPTH_DAY_V01.01_20180507.txt, LUT_AVHRRF_MA_L2P_SKIN_DAYNIGHT_V01.00_20180408.txt, LUT_AVHRRF_MA_L2P_DEPTH_NIGHT_V01.01_20180507.txt, LUT_AVHRRF_MA_L2P_SKIN_NIGHT_V01.00_20180408.txt" ;
:geospatial_bounds = "POLYGON((-142.547 80.308, 81.237 63.979, 30.820 55.879, -46.576 66.947, -142.547 80.308))" ;
:row_start = 50 ;
:row_count = 1804 ;
:row_count = 1660 ;
:col_start = 0 ;
:col_count = 18000 ;
:NCO = "netCDF Operators version 4.9.3 (Homepage = http://nco.sf.net, Code = http://github.com/nco/nco)" ;
:NCO = "netCDF Operators version 5.0.6 (Homepage = http://nco.sf.net, Code = http://github.com/nco/nco)" ;
data:

crs = 0 ;

dt_analysis =
7, 7, 7, 7, 7, 7, 7, 6, 6, 6, 7,
7, 7, 8, 8, 7, 7, 7, 7, 7, 7, 7,
8, 8, 7, 7, 7, 7, 7, 7, 7, 7, 7,
8, 8, 7, 7, 7, 8, 8, 7, 7, 8, 8,
8, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8,
8, 8, 8, 7, 7, 8, 8, 9, 8, 8, 8 ;
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, _, _,
1, 1, 1, 1, 1, 1, _, _, _, _,
1, 1, 1, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

l2p_flags =
4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608,
4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608,
4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608,
4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608,
4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608,
4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608, 4608 ;
2048, 2048, 2048, 2048, 2048, 2048, 2048, 2048, 2048, 2048,
2048, 2048, 2048, 2048, 2048, 2048, 2048, 2048, 18432, 18432,
2048, 2048, 2048, 2048, 2048, 2048, 18432, 18432, 18432, 18432,
2048, 2048, 2048, 18432, 18432, 18432, 18432, 18432, 18432, 18432,
18432, 18432, 18432, 18432, 18432, 18432, 18432, 18432, 18432, 18432 ;

lat = 56.71, 56.69, 56.67, 56.65, 56.63, 56.61 ;
lat = 77.95, 77.93, 77.91, 77.89, 77.87 ;

lon = 151.11, 151.13, 151.15, 151.17, 151.19, 151.21, 151.23, 151.25,
151.27, 151.29, 151.31 ;
lon = 56.52999, 56.55, 56.57, 56.59, 56.60999, 56.62999, 56.64999, 56.66999,
56.68999, 56.71 ;

or_number_of_pixels =
11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11,
11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11,
11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11,
11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11,
11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11,
11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11 ;
11, 11, 11, 11, 11, 11, 11, 11, 11, 11,
11, 11, 11, 11, 11, 11, 11, 11, _, _,
11, 11, 11, 11, 11, 11, _, _, _, _,
11, 11, 11, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

quality_level =
5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,
5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,
5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,
5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,
5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5,
5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5 ;
5, 5, 5, 5, 5, 5, 5, 5, 5, 5,
5, 5, 5, 5, 5, 5, 5, 5, 0, 0,
5, 5, 5, 5, 5, 5, 0, 0, 0, 0,
5, 5, 5, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ;

satellite_zenith_angle =
-46, -46, -46, -46, -46, -46, -46, -46, -46, -46, -46,
-46, -46, -46, -46, -46, -46, -46, -46, -46, -46, -46,
-46, -46, -46, -46, -46, -46, -46, -46, -46, -46, -46,
-46, -46, -46, -46, -46, -46, -46, -46, -46, -46, -46,
-46, -46, -46, -46, -46, -46, -46, -46, -46, -46, -46,
-46, -46, -46, -46, -46, -46, -46, -46, -46, -46, -46 ;
43, 43, 43, 43, 43, 43, 43, 43, 43, 43,
43, 43, 43, 43, 43, 43, 43, 43, _, _,
43, 43, 43, 43, 43, 43, _, _, _, _,
43, 43, 43, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

sea_surface_temperature =
982, 981, 981, 979, 975, 972, 968, 964, 961, 958, 958,
982, 981, 979, 977, 973, 972, 968, 966, 962, 960, 959,
982, 980, 974, 969, 969, 970, 969, 966, 962, 961, 959,
982, 979, 972, 970, 970, 971, 969, 963, 961, 960, 960,
974, 972, 969, 967, 968, 969, 970, 967, 962, 961, 961,
970, 970, 968, 966, 965, 968, 968, 969, 965, 963, 960 ;
-168, -168, -168, -168, -168, -168, -168, -168, -168, -168,
-169, -169, -169, -169, -169, -168, -168, -168, _, _,
-169, -169, -169, -169, -169, -169, _, _, _, _,
-169, -169, -169, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

sses_bias =
83, 82, 80, 79, 78, 77, 77, 76, 74, 73, 73,
81, 80, 79, 79, 78, 77, 77, 75, 74, 73, 72,
78, 78, 78, 78, 78, 76, 75, 74, 74, 73, 73,
77, 78, 78, 77, 76, 75, 74, 73, 74, 74, 74,
78, 78, 78, 76, 75, 74, 74, 75, 74, 75, 75,
77, 78, 77, 75, 74, 75, 76, 76, 77, 77, 76 ;
29, 29, 29, 29, 29, 29, 28, 28, 28, 28,
29, 29, 29, 29, 29, 29, 29, 29, _, _,
29, 29, 29, 29, 29, 29, _, _, _, _,
29, 29, 28, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

sses_standard_deviation =
-39, -39, -39, -39, -39, -39, -39, -39, -39, -39, -39,
-40, -40, -39, -39, -39, -39, -39, -39, -39, -39, -39,
-42, -41, -40, -39, -39, -39, -39, -39, -39, -39, -39,
-44, -41, -39, -39, -39, -40, -41, -41, -40, -39, -39,
-41, -40, -39, -39, -40, -40, -40, -40, -40, -41, -41,
-40, -39, -39, -42, -43, -45, -44, -41, -39, -40, -42 ;
-58, -58, -58, -58, -58, -58, -58, -58, -58, -58,
-58, -58, -58, -58, -58, -58, -58, -58, _, _,
-58, -58, -58, -58, -58, -58, _, _, _, _,
-58, -58, -58, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

sst_dtime =
2382, 2382, 2381, 2381, 2381, 2380, 2380, 2380, 2379, 2379, 2378,
2383, 2383, 2382, 2382, 2382, 2381, 2381, 2381, 2380, 2380, 2380,
2384, 2384, 2384, 2383, 2383, 2383, 2382, 2382, 2382, 2381, 2381,
2386, 2385, 2385, 2384, 2384, 2384, 2383, 2383, 2383, 2382, 2382,
2387, 2386, 2386, 2386, 2385, 2385, 2384, 2384, 2384, 2384, 2383,
2388, 2388, 2387, 2387, 2386, 2386, 2386, 2385, 2385, 2385, 2384 ;
986, 986, 986, 986, 987, 987, 987, 987, 987, 987,
985, 985, 985, 985, 985, 985, 986, 986, _, _,
985, 985, 984, 984, 984, 984, _, _, _, _,
984, 984, 984, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;

time = 1277946000 ;
time = 1269445200 ;

wind_speed =
43, 44, 44, 44, 44, 45, 45, 45, 45, 46, 46,
44, 44, 44, 45, 45, 45, 45, 46, 46, 46, 46,
44, 44, 45, 45, 45, 45, 46, 46, 46, 46, 47,
45, 45, 45, 45, 45, 46, 46, 46, 47, 47, 47,
45, 45, 45, 46, 46, 46, 46, 47, 47, 47, 47,
45, 45, 46, 46, 46, 46, 47, 47, 47, 47, 48 ;
56, 56, 56, 56, 57, 57, 57, 57, 57, 57,
55, 56, 56, 56, 56, 56, 56, 56, _, _,
55, 55, 55, 55, 55, 55, _, _, _, _,
55, 55, 55, _, _, _, _, _, _, _,
_, _, _, _, _, _, _, _, _, _ ;
}
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