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GitHub Issue NOAA-EMC/GSI#112. A refactor of CMake build framework. #327

Merged
merged 91 commits into from
May 18, 2022
Merged

GitHub Issue NOAA-EMC/GSI#112. A refactor of CMake build framework. #327

merged 91 commits into from
May 18, 2022

Commits on Feb 9, 2021

  1. WIP: cleanup top-level CMakeLists.txt

    @aerorahul
    aerorahul committed Feb 9, 2021
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Commits on Feb 10, 2021

  1. clean up ncdiag cmake build

    @aerorahul
    aerorahul committed Feb 10, 2021
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  2. build global_gsi.x. regional requires something from wrflib

    @aerorahul
    aerorahul committed Feb 10, 2021
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Commits on Feb 11, 2021

  1. wcoss_d build

    @aerorahul
    aerorahul committed Feb 11, 2021
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  2. hierarchy of compiler flags

    @aerorahul
    aerorahul committed Feb 11, 2021
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  3. Update Intel Fortran flags

    @aerorahul
    aerorahul committed Feb 11, 2021
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  4. order of includes matter

    @aerorahul
    aerorahul committed Feb 11, 2021
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Commits on Feb 13, 2021

  1. install built library and executable for GSI

    @aerorahul
    aerorahul committed Feb 13, 2021
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Commits on Feb 15, 2021

  1. Issue #112: update intel fortran flags, add intel c flags, replace fv… 

    …3gfs_ncio with ncio module, replace bufr_4_DA with bufr_d
    @RussTreadon-NOAA
    RussTreadon-NOAA committed Feb 15, 2021
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Commits on Nov 16, 2021

  1. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Nov 16, 2021
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Commits on Feb 16, 2022

  1. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Feb 16, 2022
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Commits on Feb 17, 2022

  1. updates for GNU v10

    @aerorahul
    aerorahul committed Feb 17, 2022
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  2. add missing files in gsi_files.cmake

    @aerorahul
    aerorahul committed Feb 17, 2022
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Commits on Feb 24, 2022

  1. build works with GNU for GSI library and apps. Install creates packag… 

    …e config
    @aerorahul
    aerorahul committed Feb 24, 2022
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  2. gsi is its own project now

    @aerorahul
    aerorahul committed Feb 24, 2022
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Commits on Feb 25, 2022

  1. build GSI and EnKF GFS flavors

    @aerorahul
    aerorahul committed Feb 25, 2022
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  2. ncdiag, gsi and enkf can be now built independently

    @aerorahul
    aerorahul committed Feb 25, 2022
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Commits on Mar 2, 2022

  1. build all (except Monitoring) utilities

    @aerorahul
    aerorahul committed Mar 2, 2022
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  2. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Mar 2, 2022
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  3. update logic when GSI and EnKF are not found for utilities

    @aerorahul
    aerorahul committed Mar 2, 2022
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  4. build mods for Orion

    @aerorahul
    aerorahul committed Mar 2, 2022
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  5. make messages identify their origin

    @aerorahul
    aerorahul committed Mar 2, 2022
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Commits on Mar 3, 2022

  1. promote Release instead of Production

    @aerorahul
    aerorahul committed Mar 3, 2022
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  2. add -DNDEBUG flags for gsi and enkf

    @aerorahul
    aerorahul committed Mar 3, 2022
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  3. revert whitespace differences that were unintended

    @aerorahul
    aerorahul committed Mar 3, 2022
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Commits on Mar 4, 2022

  1. remove obsolete cmake/Modules directory

    @aerorahul
    aerorahul committed Mar 4, 2022
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  2. remove top-level cmake/ directory

    @aerorahul
    aerorahul committed Mar 4, 2022
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  3. add host specific flags to module files

    @aerorahul
    aerorahul committed Mar 4, 2022
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Commits on Mar 5, 2022

  1. make packages more robust and handle transitive libraries once and done.

    Rahul Mahajan committed Mar 5, 2022
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  2. add options for building different components.

    @aerorahul
    aerorahul committed Mar 5, 2022
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Commits on Mar 7, 2022

  1. add utilities that are used but did not have CMake builds

    @aerorahul
    aerorahul committed Mar 7, 2022
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Commits on Mar 13, 2022

  1. Revert "remove obsolete cmake/Modules directory" 

    This reverts commit 91fb0ac.
    @aerorahul
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  2. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Mar 13, 2022
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Commits on Mar 17, 2022

  1. ncdiag is a requirement since the stubs are obsolete

    @aerorahul
    aerorahul committed Mar 17, 2022
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Commits on Mar 18, 2022

  1. add FindMKL.cmake. Remove finding ncdiag from gsi as a dependency.

    @aerorahul
    aerorahul committed Mar 18, 2022
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  2. Build changes for WCOSS Dell

    @aerorahul
    aerorahul committed Mar 18, 2022
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Commits on Mar 24, 2022

  1. Make necessary changes to allow feature/cmake-refactor to run regress… 

    …ion tests: (#1)

Changes from @MichaelLueken-NOAA on setting up offline regression testing.
    @MichaelLueken
    MichaelLueken committed Mar 24, 2022
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Commits on Mar 25, 2022

  1. Build conventional monitoring utilities. There is a lot of repeated c… 

    …ode in these and could benefit from making a library rather than copy/paste of the same code for each utility.
    @aerorahul
    aerorahul committed Mar 25, 2022
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Commits on Mar 26, 2022

  1. Build Radiance and Ozone monitoring utilities. There is a lot of repe… 

    …ated code in these and could benefit from making a library rather than copy/paste of the same code for each utility.
    @aerorahul
    aerorahul committed Mar 26, 2022
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  2. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Mar 26, 2022
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  3. retain trailing white spaces to minimize diffs

    @aerorahul
    aerorahul committed Mar 26, 2022
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  4. add place-holder for regression testing

    @aerorahul
    aerorahul committed Mar 26, 2022
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Commits on Mar 27, 2022

  1. remove dependency on NDATE from regression tests. Use Unix date instead.

    @aerorahul
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Commits on Mar 28, 2022

  1. reinstate regression testing via ctest.

    @aerorahul
    aerorahul committed Mar 28, 2022
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Commits on Mar 29, 2022

  1. Fix duplicate definition of MPI variables (#3) 

    * Fix duplicate definition of MPI variables
* Replace "include mpif.h" with "use mpi"
    @christopherwharrop-noaa
    christopherwharrop-noaa committed Mar 29, 2022
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  2. minor update to EnKF/CMakeLists.txt

    @aerorahul
    aerorahul committed Mar 29, 2022
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Commits on Mar 30, 2022

  1. reinstate regression tests w/ ctest

    @aerorahul
    aerorahul committed Mar 30, 2022
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Commits on Mar 31, 2022

  1. remove stale cmake/Modules

    @aerorahul
    aerorahul committed Mar 31, 2022
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  2. remove broken Debug CPP definitions from ncdiag library

    @aerorahul
    aerorahul committed Mar 31, 2022
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  3. Build with GNU and CMAKE_BUILD_TYPE=Debug

    @aerorahul
    aerorahul committed Mar 31, 2022
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  4. make DEBUG Intel flags consistent

    @aerorahul
    aerorahul committed Mar 31, 2022
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  5. allow users to provide CMAKE_OPTS without having to edit the script

    @aerorahul
    aerorahul committed Mar 31, 2022
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Commits on Apr 1, 2022

  1. make util build options consistent

    @aerorahul
    aerorahul committed Apr 1, 2022
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  2. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Apr 1, 2022
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Commits on Apr 5, 2022

  1. Fix logical comparison bug caught by Gnu build (#4)

    @christopherwharrop-noaa
    christopherwharrop-noaa committed Apr 5, 2022
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Commits on Apr 6, 2022

  1. bugfix for cheyenne

    @aerorahul
    aerorahul committed Apr 6, 2022
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  2. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Apr 6, 2022
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  3. fix logical comparison

    @aerorahul
    aerorahul committed Apr 6, 2022
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Commits on Apr 14, 2022

  1. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Apr 14, 2022
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  2. build cleanly

    @aerorahul
    aerorahul committed Apr 14, 2022
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Commits on Apr 15, 2022

  1. fix improper character array allocation in fv3reg

    @aerorahul
    aerorahul committed Apr 15, 2022
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  2. cleanup the build script to allow substantial user control

    @aerorahul
    aerorahul committed Apr 15, 2022
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Commits on Apr 16, 2022

  1. add wrapper for NCO build script. 

    Address GFS adaptation for NCO requirement of "pruning"
Add BUILD_UTIL_ALL option for convenience
    @aerorahul
    aerorahul committed Apr 16, 2022
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  2. update INSTALL.md to add BUILD_UTIL_ALL option

    @aerorahul
    aerorahul committed Apr 16, 2022
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Commits on Apr 18, 2022

  1. trap pruning error

    @aerorahul
    aerorahul committed Apr 18, 2022
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Commits on Apr 21, 2022

  1. Merge branch 'master' into feature/cmake-update

    @aerorahul
    aerorahul committed Apr 21, 2022
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  2. fix the error with machine_id for cray and dell

    @aerorahul
    aerorahul committed Apr 21, 2022
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  3. fix the error with machine_id for cray and dell

    @aerorahul
    aerorahul committed Apr 21, 2022
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Commits on Apr 25, 2022

  1. update cmake version in orion modulefile

    @aerorahul
    aerorahul committed Apr 25, 2022
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  2. Merge branch 'develop' into feature/cmake-update

    @aerorahul
    aerorahul committed Apr 25, 2022
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Commits on Apr 26, 2022

  1. update ncio to v1.1.0

    @aerorahul
    aerorahul committed Apr 26, 2022
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  2. consolidate common modulefiles in a modulefile.ProdGSI.common

    @aerorahul
    aerorahul committed Apr 26, 2022
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  3. add intel and gnu modulefiles for Cheyenne from Chris Harrop

    @aerorahul
    aerorahul committed Apr 26, 2022
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  4. retain only common modules in modulefile.ProdGSI.common;

    @aerorahul
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Commits on Apr 27, 2022

  1. add missing #%Module in the common modulefile

    @aerorahul
    aerorahul committed Apr 27, 2022
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  2. revert back to ncio/1.0.0

    @aerorahul
    aerorahul committed Apr 27, 2022
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  3. Merge branch 'feature/cmake-update' of https://github.com/aerorahul/gsi… 

    … into feature/cmake-update
    @aerorahul
    aerorahul committed Apr 27, 2022
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  4. Fixes for Cheyenne and Jet (#5) 

    * Fix duplicate MPI definitions in EFSOI exposed by Cheyenne build

Set CC, FC, CXX explicitly for Cheyenne GNU to avoid
use of incorrect MPI module.

Update w3emc to version 2.9.2.

* Fix MPI API call bug that passed mpi_status type instead of a status variable

* Revert version of w3emc and update cmake version for Jet
    @christopherwharrop-noaa
    christopherwharrop-noaa committed Apr 27, 2022
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Commits on Apr 29, 2022

  1. remove build.comgsi as it is unlikely to work with the current refact… 

    …or. Use the `build.sh` instead
    @aerorahul
    aerorahul committed Apr 29, 2022
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  2. Merge branch 'feature/cmake-update' of https://github.com/aerorahul/gsi… 

    … into feature/cmake-update
    @aerorahul
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Commits on May 2, 2022

  1. Merge branch 'develop' into feature/cmake-update

    @aerorahul
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Commits on May 3, 2022

  1. Merge branch 'develop' into feature/cmake-update

    @aerorahul
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Commits on May 9, 2022

  1. Merge branch 'develop' into feature/cmake-update 

    develop just got changed knowing full well the scope of this PR making more work here.
    @aerorahul
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Commits on May 10, 2022

  1. Keeping up with #369, where only some of the modulefiles were updated… 

    … to lua.
    @aerorahul
    aerorahul committed May 10, 2022
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  2. convert remaining modulefiles to lua.

    @aerorahul
    aerorahul committed May 10, 2022
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  3. modulefile.ProdGSI.common.lua was buggy. a source code change slipped… 

    … through via one of the many merged PRs
    @aerorahul
    aerorahul committed May 10, 2022
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  4. remove prod_util from common and load in the platform itself

    @aerorahul
    aerorahul committed May 10, 2022
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  5. since we are changing modulefiles, make their names short and consist… 

    …ent with other applications
    @aerorahul
    aerorahul committed May 10, 2022
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Commits on May 11, 2022

  1. wcoss_dell_p3 cmake is from hpc-stack. Fix that. 

    update detect_machine.sh and module-setup.sh for wcoss2.
be smart in auto-detection.
fix warnings in source codes.
    @aerorahul
    aerorahul committed May 11, 2022
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  2. protect against accidental commits of binaries

    @aerorahul
    aerorahul committed May 11, 2022
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Commits on May 12, 2022

  1. explicitly use calls from MPI module

    @aerorahul
    aerorahul committed May 12, 2022
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