Sanitize gfs-utils (#11)

.gitignore

@@ -0,0 +1,12 @@
+build/
+exec/
+install/
+log*
+
+*.mod
+*.[aox]
+
+*.sw[a-p]
+~
+.DS_Store
+

sorc/CMakeLists.txt → CMakeLists.txt

@@ -1,20 +1,14 @@
-cmake_minimum_required(VERSION 3.15)
+cmake_minimum_required(VERSION 3.19)
 
-# Get the version from the VERSION file.
-#file(STRINGS "VERSION" pVersion)
-set(pVersion 1.0.0)
+project(gfsutils
+        VERSION 1.0.0
+        LANGUAGES Fortran)
 
-project(
-  workflow_utils
-  VERSION ${pVersion}
-  LANGUAGES Fortran)
 list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
+set(CMAKE_DIRECTORY_LABELS ${PROJECT_NAME})
 
 include(GNUInstallDirs)
 
-# User options.
-option(OPENMP "use OpenMP threading" ON)
-
 # Build type
 if(NOT CMAKE_BUILD_TYPE MATCHES "^(Debug|Release|RelWithDebInfo|MinSizeRel)$")
   message(STATUS "Setting build type to 'Release' as none was specified.")
@@ -25,27 +19,22 @@ if(NOT CMAKE_BUILD_TYPE MATCHES "^(Debug|Release|RelWithDebInfo|MinSizeRel)$")
                                                "MinSizeRel" "RelWithDebInfo")
 endif()
 
-# Set compiler flags.
-if(CMAKE_Fortran_COMPILER_ID MATCHES "^(Intel)$")
-  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -g -traceback")
-  set(CMAKE_Fortran_FLAGS_RELEASE "-O3")
-  set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -check -check noarg_temp_created -check nopointer -fp-stack-check -fstack-protector-all -fpe0 -debug -ftrapuv")
-elseif(CMAKE_Fortran_COMPILER_ID MATCHES "^(GNU)$")
-  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -g -fbacktrace")
-  set(CMAKE_Fortran_FLAGS_RELEASE "-O3")
-  set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -ggdb -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -ffpe-trap=invalid,zero,overflow -fbounds-check")
+if(NOT CMAKE_Fortran_COMPILER_ID MATCHES "^(GNU|Intel)$")
+  message(WARNING "${CMAKE_Fortran_COMPILER_ID} is not supported.")
 endif()
 
+# User options.
+option(OPENMP "use OpenMP threading" ON)
+
 # Find packages.
 find_package(MPI REQUIRED)
 find_package(NetCDF REQUIRED Fortran)
-
 if(OPENMP)
   find_package(OpenMP REQUIRED COMPONENTS Fortran)
 endif()
 
+# NCEPLibs dependencies.
 find_package(bacio REQUIRED)
-find_package(w3nco REQUIRED)
 find_package(w3emc REQUIRED)
 find_package(sp REQUIRED)
 find_package(ip REQUIRED)
@@ -56,26 +45,29 @@ find_package(g2 REQUIRED)
 find_package(bufr REQUIRED)
 find_package(landsfcutil REQUIRED)
 find_package(wgrib2 REQUIRED)
-find_package(gempak REQUIRED)
-# find_package(gfortran REQUIRED)
+#rdbfmsua.fd needs gempak and gfortran
+#but gempak is so old, any hopes of a find_package(gempak) is null
+#some things ought to wither and die
+#find_package(gempak REQUIRED)
+#find_package(gfortran REQUIRED)
+
+# See https://github.com/NOAA-EMC/NCEPLIBS-nemsio/pull/22
+target_link_libraries(nemsio::nemsio INTERFACE w3emc::w3emc_d bacio::bacio_4)
+
+# Set compiler flags.
+if(CMAKE_Fortran_COMPILER_ID MATCHES "^(Intel)$")
+  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -g -traceback")
+  set(CMAKE_Fortran_FLAGS_RELEASE "-O3")
+  set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -check -check noarg_temp_created -check nopointer -fp-stack-check -fstack-protector-all -fpe0 -debug -ftrapuv")
+elseif(CMAKE_Fortran_COMPILER_ID MATCHES "^(GNU)$")
+  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -g -fbacktrace")
+  set(CMAKE_Fortran_FLAGS_RELEASE "-O3")
+  set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -ggdb -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -ffpe-trap=invalid,zero,overflow -fbounds-check")
+endif()
+
+# Build and install code.
+add_subdirectory(src)
 
-add_subdirectory(enkf_chgres_recenter.fd)
-add_subdirectory(enkf_chgres_recenter_nc.fd)
-add_subdirectory(fv3nc2nemsio.fd)
-add_subdirectory(regrid_nemsio.fd)
-add_subdirectory(gaussian_sfcanl.fd)
-add_subdirectory(gfs_bufr.fd)
-add_subdirectory(reg2grb2.fd)
-add_subdirectory(tocsbufr.fd)
-add_subdirectory(fbwndgfs.fd)
-add_subdirectory(vint.fd)
-add_subdirectory(tave.fd)
-add_subdirectory(syndat_qctropcy.fd)
-add_subdirectory(syndat_maksynrc.fd)
-add_subdirectory(syndat_getjtbul.fd)
-add_subdirectory(supvit.fd)
+# Install utility scripts.
+add_subdirectory(ush)
 
-add_subdirectory(mkgfsawps.fd)
-add_subdirectory(overgridid.fd)
-# add_subdirectory(rdbfmsua.fd)
-add_subdirectory(webtitle.fd)

modulefiles/gfsutils_common.lua

@@ -0,0 +1,37 @@
+help([[
+Load common modules to build GFS utilities on all machines
+]])
+
+local netcdf_ver=os.getenv("netcdf_ver") or "4.7.4"
+
+local bufr_ver=os.getenv("bufr_ver") or "11.7.0"
+local bacio_ver=os.getenv("bacio_ver") or "2.4.1"
+local w3emc_ver=os.getenv("w3emc_ver") or "2.9.2"
+local sp_ver=os.getenv("sp_ver") or "2.3.3"
+local ip_ver=os.getenv("ip_ver") or "3.3.3"
+local sigio_ver=os.getenv("sigio_ver") or "2.3.2"
+local nemsio_ver=os.getenv("nemsio_ver") or "2.5.2"
+local nemsiogfs_ver=os.getenv("nemsiogfs_ver") or "2.5.3"
+local wrf_io_ver=os.getenv("wrf_io_ver") or "1.2.0"
+local ncio_ver=os.getenv("ncio_ver") or "1.1.2"
+local g2_ver=os.getenv("g2_ver") or "3.4.5"
+local landsfcutil_ver=os.getenv("landsfcutil_ver") or "2.4.1"
+local gempak_ver=os.getenv("gempak_ver") or "7.14.1"
+local wgrib2_ver=os.getenv("wgrib2_ver") or "2.0.8"
+
+load(pathJoin("netcdf", netcdf_ver))
+
+load(pathJoin("bufr", bufr_ver))
+load(pathJoin("bacio", bacio_ver))
+load(pathJoin("w3emc", w3emc_ver))
+load(pathJoin("sp", sp_ver))
+load(pathJoin("ip", ip_ver))
+load(pathJoin("sigio", sigio_ver))
+load(pathJoin("sfcio", sfcio_ver))
+load(pathJoin("nemsio", nemsio_ver))
+load(pathJoin("wrf_io", wrf_io_ver))
+load(pathJoin("ncio", ncio_ver))
+load(pathJoin("g2", g2_ver))
+load(pathJoin("landsfcutil", landsfcutil_ver))
+--load(pathJoin("gempak", gempak_ver))
+load(pathJoin("wgrib2", wgrib2_ver))

modulefiles/gfsutils_hera.intel.lua

@@ -0,0 +1,27 @@
+help([[
+Build environment for GFS utilities on Hera
+]])
+
+prepend_path("MODULEPATH", "/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/stack")
+
+local hpc_ver=os.getenv("hpc_ver") or "1.1.0"
+local hpc_intel_ver=os.getenv("hpc_intel_ver") or "18.0.5.274"
+local hpc_impi_ver=os.getenv("hpc_impi_ver") or "2018.0.4"
+local cmake_ver=os.getenv("cmake_ver") or "3.20.1"
+
+local jasper_ver=os.getenv("jasper_ver") or "2.0.25"
+local zlib_ver=os.getenv("zlib_ver") or "1.2.11"
+local libpng_ver=os.getenv("libpng_ver") or "1.6.35"
+
+load(pathJoin("hpc", hpc_ver))
+load(pathJoin("hpc-intel", hpc_intel_ver))
+load(pathJoin("hpc-impi", hpc_impi_ver))
+load(pathJoin("cmake", cmake_ver))
+
+load(pathJoin("jasper", jasper_ver))
+load(pathJoin("zlib", zlib_ver))
+load(pathJoin("png", libpng_ver))
+
+load("gfsutils_common")
+
+whatis("Description: GFS utilities environment on Hera with Intel Compilers")

modulefiles/gfsutils_jet.lua

@@ -0,0 +1,27 @@
+help([[
+Build environment for S4 utilities on Jet
+]])
+
+prepend_path("MODULEPATH", "/lfs4/HFIP/hfv3gfs/nwprod/hpc-stack/libs/modulefiles/stack")
+
+local hpc_ver=os.getenv("hpc_ver") or "1.1.0"
+local hpc_intel_ver=os.getenv("hpc_intel_ver") or "18.0.5.274"
+local hpc_impi_ver=os.getenv("hpc_impi_ver") or "2018.4.274"
+local cmake_ver=os.getenv("cmake_ver") or "3.20.1"
+
+local jasper_ver=os.getenv("jasper_ver") or "2.0.25"
+local zlib_ver=os.getenv("zlib_ver") or "1.2.11"
+local libpng_ver=os.getenv("libpng_ver") or "1.6.35"
+
+load(pathJoin("hpc", hpc_ver))
+load(pathJoin("hpc-intel", hpc_intel_ver))
+load(pathJoin("hpc-impi", hpc_impi_ver))
+load(pathJoin("cmake", cmake_ver))
+
+load(pathJoin("jasper", jasper_ver))
+load(pathJoin("zlib", zlib_ver))
+load(pathJoin("png", libpng_ver))
+
+load("gfsutils_common")
+
+whatis("Description: GFS utilities environment on Jet with Intel Compilers")

modulefiles/gfsutils_orion.lua

@@ -0,0 +1,27 @@
+help([[
+Build environment for GFS utilities on Orion
+]])
+
+prepend_path("MODULEPATH", "/apps/contrib/NCEP/libs/hpc-stack/modulefiles/stack")
+
+local hpc_ver=os.getenv("hpc_ver") or "1.1.0"
+local hpc_intel_ver=os.getenv("hpc_intel_ver") or "2018.4"
+local hpc_impi_ver=os.getenv("hpc_impi_ver") or "2018.4"
+local cmake_ver=os.getenv("cmake_ver") or "3.22.1"
+
+local jasper_ver=os.getenv("jasper_ver") or "2.0.25"
+local zlib_ver=os.getenv("zlib_ver") or "1.2.11"
+local libpng_ver=os.getenv("libpng_ver") or "1.6.35"
+
+load(pathJoin("hpc", hpc_ver))
+load(pathJoin("hpc-intel", hpc_intel_ver))
+load(pathJoin("hpc-impi", hpc_impi_ver))
+load(pathJoin("cmake", cmake_ver))
+
+load(pathJoin("jasper", jasper_ver))
+load(pathJoin("zlib", zlib_ver))
+load(pathJoin("png", libpng_ver))
+
+load("gfsutils_common")
+
+whatis("Description: GFS utilities environment on Orion with Intel Compilers")

modulefiles/gfsutils_s4.lua

@@ -0,0 +1,29 @@
+help([[
+Build environment for GFS utilities on S4
+]])
+
+prepend_path("MODULEPATH", "/data/prod/hpc-stack/modulefiles/stack")
+
+load("license_intel")
+
+local hpc_ver=os.getenv("hpc_ver") or "1.1.0"
+local hpc_intel_ver=os.getenv("hpc_intel_ver") or "18.0.4"
+local hpc_impi_ver=os.getenv("hpc_impi_ver") or "18.0.4"
+local cmake_ver=os.getenv("cmake_ver") or "3.20.1"
+
+local jasper_ver=os.getenv("jasper_ver") or "2.0.25"
+local zlib_ver=os.getenv("zlib_ver") or "1.2.11"
+local libpng_ver=os.getenv("libpng_ver") or "1.6.35"
+
+load(pathJoin("hpc", hpc_ver))
+load(pathJoin("hpc-intel", hpc_intel_ver))
+load(pathJoin("hpc-impi", hpc_impi_ver))
+load(pathJoin("cmake", cmake_ver))
+
+load(pathJoin("jasper", jasper_ver))
+load(pathJoin("zlib", zlib_ver))
+load(pathJoin("png", libpng_ver))
+
+load("gfsutils_common")
+
+whatis("Description: GFS utilities environment on S4 with Intel Compilers")

modulefiles/gfsutils_wcoss2.lua

@@ -0,0 +1,34 @@
+help([[
+Build environment for GFS utilities on WCOSS2
+]])
+
+local PrgEnv_intel_ver=os.getenv("PrgEnv_intel_ver") or "8.1.0"
+local intel_ver=os.getenv("intel_ver") or "19.1.3.304"
+local craype_ver=os.getenv("craype_ver") or "2.7.10"
+local cray_mpich_ver=os.getenv("cray_mpich_ver") or "8.1.9"
+local cmake_ver= os.getenv("cmake_ver") or "3.20.2"
+
+local jasper_ver=os.getenv("jasper_ver") or "2.0.25"
+local zlib_ver=os.getenv("zlib_ver") or "1.2.11"
+local libpng_ver=os.getenv("libpng_ver") or "1.6.37"
+
+load(pathJoin("PrgEnv-intel", PrgEnv_intel_ver))
+load(pathJoin("intel", intel_ver))
+load(pathJoin("craype", craype_ver))
+load(pathJoin("cray-mpich", cray_mpich_ver))
+load(pathJoin("cmake", cmake_ver))
+
+load(pathJoin("jasper", jasper_ver))
+load(pathJoin("zlib", zlib_ver))
+load(pathJoin("libpng", libpng_ver))
+
+load("gfsutils_common")
+unload("ncio")
+
+pushenv("HPC_OPT", "/apps/ops/para/libs")
+prepend_path("MODULEPATH", "/apps/ops/para/libs/modulefiles/compiler/intel/19.1.3.304")
+prepend_path("MODULEPATH", "/apps/ops/para/libs/modulefiles/mpi/intel/19.1.3.304/cray-mpich/8.1.7")
+
+load("ncio/1.1.2")
+
+whatis("Description: GFS utilities environment on WCOSS2 with Intel Compilers")