[INSTALL] HDF5 1.12.2 and Netcdf 4.9.0

[junwang-noaa]

Note: Please search to see if an issue already exists for the software you are requesting to be installed.

Which software in the stack would you like installed?
HDF5 and Netcdf
Some other libraries that have dependency on these two libraries need to be rebuilt. E.g. ESMF (8.3.1 preferred) and MAPL(latest version preferred).

What is the version/tag of the software?
HDF5 1.12.2
Netcdf 4.9.0 (it needs to be built with HDF5 1.12.2)

What compilation options would you like set?
The same as previous options.

Which machines would you like to have the software installed?
See currently managed HPC machines.

Any other relevant information that we should know to correctly install the software??
Please describe in as much detail as possible.

Additional context
Add any other context or screenshots about the install request here.

[junwang-noaa]

@GeorgeVandenberghe-NOAA FYI.

[KateFriedman-NOAA]

Thanks for opening this @junwang-noaa. I'm going to follow this issue as well.

[junwang-noaa]

@climbfuji Can we build the two libraries (and associated libraried) in spack stack?

[climbfuji]

@climbfuji Can we build the two libraries (and associated libraried) in spack stack?

It's too late for this release, the code freeze is today and we haven't tested building and installing it anywhere (and there are still PRs that need to be merged for these new versions). We can do that after the spack-stack-1.1.0 as a follow-up.

[climbfuji]

I am recording the next updates for the UFS here: JCSDA/spack-stack#344

[junwang-noaa]

@edwardhartnett I want to confirm that the netcdf 4.9.0 has the Bit grooming algorithm that we can use in the ufsi-weather-model write grid component, is it correct? Thanks

[Hang-Lei-NOAA]

@junwang-noaa I have added intel installations for the requested sets on Hera hpc-stack offical installations.
The complete sets:
hdf5 1.12.2
netcdf 4.9.0
netcdf-fortran 4.6.0
netcdf-cxx 4.3.1

You can start from there, then we can add spack-stack soon.

[jkbk2004]

@Hang-Lei-NOAA can I make sure ESMF and MAPL are only two libs dependent on netcdf?

[Hang-Lei-NOAA]

No, a lot of libs are depends on netcdf. You have to search. e.g. wgrib2, upp, etc.

…

On Thu, Oct 20, 2022 at 10:46 AM JONG KIM ***@***.***> wrote: @Hang-Lei-NOAA <https://github.com/Hang-Lei-NOAA> can I make sure ESMF and MAPL are only two libs dependent on netcdf? — Reply to this email directly, view it on GitHub <#491 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AKWSMFF6Z3VQSRHP65R6LSDWEFLNNANCNFSM6AAAAAAQUEH5TY> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[jkbk2004]

So fresh rebuild might be short cut for netcdf4.9.0, right?

[Hang-Lei-NOAA]

Yes

…

On Thu, Oct 20, 2022 at 10:56 AM JONG KIM ***@***.***> wrote: So fresh rebuild might be short cut for netcdf4.9.0, right? — Reply to this email directly, view it on GitHub <#491 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AKWSMFBTP5QX2UEAB5PGJRTWEFMQ5ANCNFSM6AAAAAAQUEH5TY> . You are receiving this because you were mentioned.Message ID: ***@***.***>