add libgmp3-dev and changelog

CHANGELOG.md

@@ -0,0 +1,11 @@
+# Docker OpenStudio R - Base Image
+
+## 3.4.2 - 2018-10-30
+
+* Add libgmp3-dev to dependencies to support newer DoE.base package
+* Use new install_and_verify method for install R packages to actually test that the packages install correctly.
+
+## 3.4.2 - 2018-03-09
+
+* Base installation of dependencies and R packages
+

Dockerfile

@@ -28,6 +28,7 @@ RUN apt-get update \
         libffi-dev \
         libssl-dev \
         libyaml-dev \
+        libgmp3-dev \
         procps \
         ruby \
         ruby-dev \

base_packages.R

@@ -1,27 +1,73 @@
+# *******************************************************************************
+# OpenStudio(R), Copyright (c) 2008-2018, Alliance for Sustainable Energy, LLC.
+# All rights reserved.
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+# (1) Redistributions of source code must retain the above copyright notice,
+# this list of conditions and the following disclaimer.
+#
+# (2) Redistributions in binary form must reproduce the above copyright notice,
+# this list of conditions and the following disclaimer in the documentation
+# and/or other materials provided with the distribution.
+#
+# (3) Neither the name of the copyright holder nor the names of any contributors
+# may be used to endorse or promote products derived from this software without
+# specific prior written permission from the respective party.
+#
+# (4) Other than as required in clauses (1) and (2), distributions in any form
+# of modifications or other derivative works may not use the "OpenStudio"
+# trademark, "OS", "os", or any other confusingly similar designation without
+# specific prior written permission from Alliance for Sustainable Energy, LLC.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER, THE UNITED STATES
+# GOVERNMENT, OR ANY CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
+# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+# PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
+# EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+# *******************************************************************************
+
+# Function for installing and verifying that the package was installed correctly (i.e. can be loaded)
+install_and_verify = function(package_name, configure.args=c(), repos=c('http://cloud.r-project.org','http://cran.r-project.org')){
+    print(paste('Calling install for package ', package_name, sep=''))
+    install.packages(package_name, configure.args=configure.args, repos=repos)
+    if (!require(package_name, character.only = TRUE)){
+        print('Error installing package, check log')
+        quit(status=1)
+    }
+    print(paste('Successfully installed and test loaded ', package_name, sep=''))
+}
+
 # Install Base Packages
-install.packages('R.methodsS3', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('R.oo', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('R.utils', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('Rcpp', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('rjson', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('RSQLite', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('RUnit', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
+install_and_verify('R.methodsS3')
+install_and_verify('R.oo')
+install_and_verify('R.utils')
+install_and_verify('Rcpp')
+install_and_verify('rjson')
+install_and_verify('RSQLite')
+install_and_verify('RUnit')
 
 # Data Manipulation
-install.packages('plyr', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('reshape2', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
+install_and_verify('plyr')
+install_and_verify('reshape2')
 
 # timeseries
-install.packages('xts', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
+install_and_verify('xts')
 
 # plotting / visualization
-install.packages('cowplot', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('ggplot2', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('ggsci', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('vcd', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
+install_and_verify('cowplot')
+install_and_verify('ggplot2')
+install_and_verify('ggsci')
+install_and_verify('vcd')
 
 # parallel processing
-install.packages('doMC', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('doParallel', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('foreach', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
-install.packages('iterators', repos=c('http://cloud.r-project.org','http://cran.r-project.org'))
+install_and_verify('doMC')
+install_and_verify('doParallel')
+install_and_verify('foreach')
+install_and_verify('iterators')