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| Original file line number | Diff line number | Diff line change |
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| ################################################################# | ||
| # Makefile for the FlexAID program (Linux Version) # | ||
| # # | ||
| # Francis Gaudreault & Rafael Najmanovich # | ||
| # # | ||
| ################################################################# | ||
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| BOINC = 0 | ||
| DEBUG = 0 | ||
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| # Include path | ||
| I = ../LIB | ||
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| # Executable path | ||
| W = ../WRK | ||
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| CXX = g++ | ||
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| CXXFLAGS = -Wall -O3 | ||
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| ifeq ($(DEBUG),1) | ||
| CXXFLAGS = -Wall -g | ||
| endif | ||
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| # BOOST Installation path | ||
| BOOST_INCLUDES = /home/francis/boost_1_51_0 | ||
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| # BOINC Installation path | ||
| BOINC_BUILD = /home/francis/boinc | ||
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| LIBDIRS = | ||
| LIBS = | ||
| INCLUDES = -I$(BOOST_INCLUDES) | ||
| LDFLAGS = | ||
| DEFS = | ||
|
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| ifeq ($(BOINC),1) | ||
|
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| #===========================================================# | ||
| #----------------------# | ||
| # BOINC Libraries | ||
|
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| LIBDIRS := -L. -L$(BOINC_BUILD)/lib -L$(BOINC_BUILD)/api | ||
| LIBS := $(LIBDIRS) -lboinc_api -lboinc | ||
|
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| #===========================================================# | ||
| #----------------------# | ||
| # BOINC Includes | ||
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| INCLUDES := $(INCLUDES) -I$(BOINC_BUILD) -I$(BOINC_BUILD)/lib -I$(BOINC_BUILD)/api | ||
| #----------------------# | ||
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| LDFLAGS := -pthread | ||
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| DEFS := -DENABLE_BOINC | ||
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| endif | ||
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| OBJ = top.o \ | ||
| boinc.o \ | ||
| assign_eigen.o \ | ||
| alter_mode.o \ | ||
| buildic.o \ | ||
| Vcontacts.o \ | ||
| vcfunction.o \ | ||
| spfunction.o \ | ||
| create_rebuild_list.o \ | ||
| print_surfmat.o \ | ||
| ic2cf.o \ | ||
| read_coor.o \ | ||
| read_grid.o \ | ||
| read_input.o \ | ||
| read_lig.o \ | ||
| read_pdb.o \ | ||
| read_normalgrid.o \ | ||
| read_eigen.o \ | ||
| add2_optimiz_vec.o \ | ||
| partition_grid.o \ | ||
| assign_radius.o \ | ||
| assign_radii.o \ | ||
| assign_types.o \ | ||
| assign_shift.o \ | ||
| bondedlist.o \ | ||
| buildcc.o \ | ||
| buildlist.o \ | ||
| geometry.o \ | ||
| read_conect.o \ | ||
| residue_conect.o \ | ||
| modify_pdb.o \ | ||
| wif083.o \ | ||
| calc_cleftic.o \ | ||
| write_pdb.o \ | ||
| gaboom.o \ | ||
| calc_center.o \ | ||
| ic_bounds.o \ | ||
| buildic_point.o \ | ||
| buildcc_point.o \ | ||
| read_rmsdst.o \ | ||
| calc_rmsd_chrom.o \ | ||
| calc_rmsd.o \ | ||
| write_rrd.o \ | ||
| write_rrg.o \ | ||
| write_sphere.o \ | ||
| write_grid.o \ | ||
| read_rotlib.o \ | ||
| number_of_dihedrals.o \ | ||
| read_flexscfile.o \ | ||
| read_rotobs.o \ | ||
| set_intprob.o \ | ||
| slice_grid.o \ | ||
| build_rotamers.o \ | ||
| check_clash.o \ | ||
| dee_pivot.o \ | ||
| read_constraints.o \ | ||
| assign_constraint.o \ | ||
| assign_constraint_threshold.o \ | ||
| update_constraint.o \ | ||
| update_bonded.o \ | ||
| update_optres.o \ | ||
| read_emat.o \ | ||
| read_spheres.o \ | ||
| generate_grid.o \ | ||
| cluster.o \ | ||
| maps.o | ||
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| all: a.out | ||
| \mv a.out $W/FlexAID_Linux32 | ||
| \ln -sfn $W/FlexAID_Linux32 $W/FlexAID | ||
| clean: | ||
| \rm -f $W/FlexAID core *~ $I/*~ $W/*~ *.o a.out | ||
| clear | ||
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| # Linking / Create executable | ||
| a.out: $(OBJ) | ||
| $(CXX) -lm $(LDFLAGS) $(OBJ) $(LIBS) | ||
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| # Build main() | ||
| top.o: $I/top.c $I/flexaid.h $I/gaboom.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/top.c $(INCLUDES) | ||
|
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| # Build the BOINC FlexAID Library | ||
| boinc.o: $I/boinc.c $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/boinc.c $(INCLUDES) | ||
|
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| assign_shift.o: $I/assign_shift.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_shift.c | ||
|
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| buildic.o: $I/buildic.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/buildic.c | ||
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| Vcontacts.o : $I/Vcontacts.c $I/flexaid.h $I/Vcontacts.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/Vcontacts.c $(INCLUDES) | ||
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| ic2cf.o: $I/ic2cf.c $I/flexaid.h $I/gaboom.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/ic2cf.c $(INCLUDES) | ||
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| vcfunction.o: $I/vcfunction.c $I/flexaid.h $I/Vcontacts.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/vcfunction.c | ||
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| spfunction.o: $I/spfunction.c $I/flexaid.h $I/Vcontacts.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/spfunction.c | ||
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| create_rebuild_list.o: $I/create_rebuild_list.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/create_rebuild_list.c $(INCLUDES) | ||
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| read_coor.o: $I/read_coor.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_coor.c $(INCLUDES) | ||
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| read_constraints.o: $I/read_constraints.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_constraints.c $(INCLUDES) | ||
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| assign_constraint.o: $I/assign_constraint.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_constraint.c | ||
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| assign_constraint_threshold.o: $I/assign_constraint_threshold.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_constraint_threshold.c | ||
|
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| modify_pdb.o: $I/modify_pdb.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/modify_pdb.c $(INCLUDES) | ||
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| update_constraint.o: $I/update_constraint.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/update_constraint.c $(INCLUDES) | ||
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| update_optres.o: $I/update_optres.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/update_optres.c $(INCLUDES) | ||
|
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| slice_grid.o: $I/slice_grid.cpp $I/flexaid.h $I/maps.hpp $I/gaboom.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/slice_grid.cpp $(INCLUDES) | ||
|
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| update_bonded.o: $I/update_bonded.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/update_bonded.c $(INCLUDES) | ||
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| read_grid.o: $I/read_grid.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_grid.c $(INCLUDES) | ||
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| read_input.o: $I/read_input.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_input.c $(INCLUDES) | ||
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| read_lig.o: $I/read_lig.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_lig.c $(INCLUDES) | ||
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| read_pdb.o: $I/read_pdb.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_pdb.c $(INCLUDES) | ||
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| add2_optimiz_vec.o: $I/add2_optimiz_vec.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/add2_optimiz_vec.c $(INCLUDES) | ||
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| assign_radius.o: $I/assign_radius.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_radius.c $(INCLUDES) | ||
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| assign_radii.o: $I/assign_radii.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_radii.c $(INCLUDES) | ||
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| assign_types.o: $I/assign_types.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_types.c $(INCLUDES) | ||
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| bondedlist.o: $I/bondedlist.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/bondedlist.c $(INCLUDES) | ||
|
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| buildcc.o: $I/buildcc.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/buildcc.c | ||
|
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| buildlist.o: $I/buildlist.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/buildlist.c | ||
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| geometry.o: $I/geometry.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/geometry.c | ||
|
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| read_conect.o: $I/read_conect.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_conect.c | ||
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| residue_conect.o: $I/residue_conect.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/residue_conect.c $(INCLUDES) | ||
|
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| wif083.o: $I/wif083.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/wif083.c | ||
|
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| calc_cleftic.o: $I/calc_cleftic.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/calc_cleftic.c | ||
|
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| write_pdb.o: $I/write_pdb.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/write_pdb.c $(INCLUDES) | ||
|
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| gaboom.o: $I/gaboom.c $I/flexaid.h $I/gaboom.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/gaboom.c $(INCLUDES) | ||
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| calc_center.o: $I/calc_center.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/calc_center.c | ||
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| ic_bounds.o: $I/ic_bounds.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/ic_bounds.c | ||
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| buildic_point.o: $I/buildic_point.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/buildic_point.c | ||
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| buildcc_point.o: $I/buildcc_point.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/buildcc_point.c | ||
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| read_rmsdst.o: $I/read_rmsdst.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_rmsdst.c $(INCLUDES) | ||
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| calc_rmsd_chrom.o: $I/calc_rmsd_chrom.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/calc_rmsd_chrom.c $(INCLUDES) | ||
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| calc_rmsd.o: $I/calc_rmsd.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/calc_rmsd.c | ||
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| write_rrd.o: $I/write_rrd.c $I/flexaid.h $I/gaboom.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/write_rrd.c $(INCLUDES) | ||
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| write_sphere.o: $I/write_sphere.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/write_sphere.c $(INCLUDES) | ||
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| write_grid.o: $I/write_grid.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/write_grid.c $(INCLUDES) | ||
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| write_rrg.o: $I/write_rrg.c $I/flexaid.h $I/gaboom.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/write_rrg.c $(INCLUDES) | ||
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| read_rotlib.o: $I/read_rotlib.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_rotlib.c $(INCLUDES) | ||
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| number_of_dihedrals.o: $I/number_of_dihedrals.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/number_of_dihedrals.c | ||
|
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| read_flexscfile.o: $I/read_flexscfile.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_flexscfile.c $(INCLUDES) | ||
|
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| read_rotobs.o: $I/read_rotobs.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_rotobs.c $(INCLUDES) | ||
|
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| set_intprob.o: $I/set_intprob.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/set_intprob.c | ||
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| build_rotamers.o: $I/build_rotamers.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/build_rotamers.c $(INCLUDES) | ||
|
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| check_clash.o: $I/check_clash.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/check_clash.c | ||
|
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| partition_grid.o: $I/partition_grid.cpp $I/flexaid.h $I/boinc.h $I/maps.hpp $I/gaboom.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/partition_grid.cpp $(INCLUDES) | ||
|
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| read_normalgrid.o: $I/read_normalgrid.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_normalgrid.c $(INCLUDES) | ||
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| read_eigen.o: $I/read_eigen.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_eigen.c $(INCLUDES) | ||
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| assign_eigen.o: $I/assign_eigen.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/assign_eigen.c $(INCLUDES) | ||
|
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| print_surfmat.o: $I/print_surfmat.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/print_surfmat.c $(INCLUDES) | ||
|
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| alter_mode.o: $I/alter_mode.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/alter_mode.c | ||
|
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| dee_pivot.o: $I/dee_pivot.c $I/flexaid.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/dee_pivot.c | ||
|
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| read_emat.o: $I/read_emat.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_emat.c $(INCLUDES) | ||
|
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| read_spheres.o: $I/read_spheres.c $I/flexaid.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/read_spheres.c $(INCLUDES) | ||
|
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| generate_grid.o: $I/generate_grid.cpp $I/flexaid.h $I/boinc.h $I/maps.hpp | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/generate_grid.cpp $(INCLUDES) | ||
|
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| cluster.o: $I/cluster.c $I/gaboom.h $I/boinc.h | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/cluster.c $(INCLUDES) | ||
|
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| maps.o: $I/maps.cpp $I/maps.hpp | ||
| $(CXX) $(CXXFLAGS) $(DEFS) -c $I/maps.cpp |
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