adrress conflict

NSAPH-Software · Apr 17, 2024 · c851fc0 · c851fc0
2 parents 2b05d0a + 91bdaf3
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diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -23,7 +23,7 @@ jobs:
       matrix:
         config:
           - {os: windows-latest, r: '4.2'}
-          - {os: macOS-latest, r: '4.2'}
+          # - {os: macOS-latest, r: '4.2'}
           - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
           - {os: ubuntu-20.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.1.0 (ubuntu-20.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
 

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -3,7 +3,7 @@ Package: CRE
 Title: Interpretable Discovery and Inference of Heterogeneous Treatment Effects
 Version: 0.2.6
 Authors@R: c(
-    person("Naeem", "Khoshnevis", , "nkhoshnevis@g.harvard.edu", role = c("aut"),
+    person("Naeem", "Khoshnevis", , "nkhoshnevis@g.harvard.edu", role = "aut",
            comment = c(ORCID = "0000-0003-4315-1426", AFFILIATION = "FASRC")),
     person("Daniela Maria", "Garcia", , "danielagarcia@college.harvard.edu", role = "aut",
            comment = c(ORCID = "0000-0003-3226-3561")),

diff --git a/README.md b/README.md
@@ -1,10 +1,32 @@
-| Resource    |  GitHub Actions      |  Code Coverage  |
-| ----------  | -------------------- | --------------- |
-| Platforms   | Windows, macOS, Linux|    codecov      |
-| R CMD check | [![R-CMD-check](https://github.com/nsaph-software/CRE/workflows/R-CMD-check/badge.svg)](https://github.com/nsaph-software/CRE/actions) | [![codecov](https://codecov.io/gh/NSAPH-Software/CRE/branch/develop/graph/badge.svg?token=UMSVOYRKGA)](https://app.codecov.io/gh/NSAPH-Software/CRE)|
+# CRE
+
+<p align="center">
+  <img src="man/figures/png/CRE_logo.png" height="100" alt="Cover Image"/>
+</p>
+
+
+<div align="center">
+    <a href="https://CRAN.R-project.org/package=CRE">
+        <img src="http://www.r-pkg.org/badges/version-last-release/CRE" alt="CRAN Package Version">
+    </a>
+    <a href="https://joss.theoj.org/papers/86a406543801a395248821c08c7ec03d">
+        <img src="https://joss.theoj.org/papers/86a406543801a395248821c08c7ec03d/status.svg" alt="JOSS Status">
+    </a>
+    <a href="https://github.com/nsaph-software/CRE/actions">
+        <img src="https://github.com/nsaph-software/CRE/workflows/R-CMD-check/badge.svg" alt="R-CMD-check Status">
+    </a>
+    <a href="https://app.codecov.io/gh/NSAPH-Software/CRE">
+        <img src="https://codecov.io/gh/NSAPH-Software/CRE/branch/develop/graph/badge.svg?token=UMSVOYRKGA" alt="Codecov">
+    </a>
+    <a href="http://www.r-pkg.org/pkg/cre">
+        <img src="https://cranlogs.r-pkg.org/badges/grand-total/CRE" alt="CRAN RStudio Mirror Downloads">
+    </a>
+</div>
+
+
+
 
 
-# CRE
 #### Interpretable Discovery and Inference of Heterogeneous Treatment Effects
 
 In health and social sciences, it is critically important to identify subgroups of the study population where a treatment has notable heterogeneity in the causal effects with respect to the average treatment effect (ATE). The bulk of heterogeneous treatment effect (HTE) literature focuses on two major tasks: (i) estimating HTEs by examining the conditional average treatment effect (CATE); (ii) discovering subgroups of a population characterized by HTE. 
@@ -214,12 +236,18 @@ Causal Rule Ensemble ([methodological paper](https://arxiv.org/abs/2009.09036))
 
 CRE (software paper)
 ```bibtex
-@article{cadei2023CRE,
-  title = {CRE: an R package for Interpretable Discovery and Estimation of Heterogeneous Treatment Effect},
-  author = {Cadei, Riccardo and Khoshnevis, Naeem and Bargagli-Stoffi, Falco J and Lee, Kwonsang and Garcia, Daniela Maria},
+@article{Cadei2023,
+  doi = {10.21105/joss.05587},
+  url = {https://doi.org/10.21105/joss.05587},
   year = {2023},
-  journal={Working paper},
-  url = {},
+  publisher = {The Open Journal},
+  volume = {8},
+  number = {92},
+  pages = {5587},
+  author = {Riccardo Cadei and Naeem Khoshnevis and Kwonsang Lee and Daniela Maria Garcia and Falco J. Bargagli Stoffi},
+  title = {CRE: An R package for interpretable discovery and inference of heterogeneous treatment effects},
+  journal = {Journal of Open Source Software},
+}
 }
 ```
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/CRE.html b/docs/articles/CRE.html
diff --git a/docs/articles/Contribution.html b/docs/articles/Contribution.html
diff --git a/docs/articles/Testing-the-Package.html b/docs/articles/Testing-the-Package.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -5,7 +5,7 @@ articles:
   CRE: CRE.html
   Contribution: Contribution.html
   Testing-the-Package: Testing-the-Package.html
-last_built: 2023-12-06T15:19Z
+last_built: 2023-12-15T19:16Z
 urls:
   reference: https://github.com/NSAPH-Software/CRE/reference
   article: https://github.com/NSAPH-Software/CRE/articles

diff --git a/docs/reference/CRE-package.html b/docs/reference/CRE-package.html
diff --git a/docs/reference/autoplot.cre.html b/docs/reference/autoplot.cre.html
diff --git a/docs/reference/check_hyper_params.html b/docs/reference/check_hyper_params.html
diff --git a/docs/reference/check_input_data.html b/docs/reference/check_input_data.html
diff --git a/docs/reference/check_method_params.html b/docs/reference/check_method_params.html
diff --git a/docs/reference/cre.html b/docs/reference/cre.html
diff --git a/docs/reference/discover_rules.html b/docs/reference/discover_rules.html
diff --git a/docs/reference/estimate_cate.html b/docs/reference/estimate_cate.html
diff --git a/docs/reference/estimate_ite.html b/docs/reference/estimate_ite.html
diff --git a/docs/reference/estimate_ite_aipw.html b/docs/reference/estimate_ite_aipw.html
diff --git a/docs/reference/estimate_ite_bart.html b/docs/reference/estimate_ite_bart.html
diff --git a/docs/reference/estimate_ite_cf.html b/docs/reference/estimate_ite_cf.html
diff --git a/docs/reference/estimate_ite_slearner.html b/docs/reference/estimate_ite_slearner.html