Unified issue-tracker for bugs in the data acqusition, management, and analysis software at NSLS-II
Please make sure that you have the following information in your bug report!
- verbose description of the bug that you found (:ref:`bug_reports`)
- watermark of the NSLS-II software stack (:ref:`watermark`)
- output of
conda listfrom your activated conda environment (:ref:`conda_list`)
Reporting bugs is critical to software development (we can't fix bugs we are not aware of). While reporting bugs is both necessary and helpful, it is critical to ensure that the reports are good bug reports. For bug reports to be helpful to your friendly software developers, they need to be
- Short. Most bugs can be produced in a few lines of code. Keeping the code short helps to convince the developers the bug is in their code not your code
- Self contained. Include everything needed to replicate the bug
- Correct. We should be able to copy/paste/run the code to reproduce the bug. If you are unsure how to reproduce the bug, providing a comprehensive description of what you did to (or what you were doing when) you encountered the bug is a reasonable substitute.
There are expanded at http://sscce.org/.
It is important to let us know what versions of python libraries you are
using. To obtain this information, you can run dataportal.watermark() from
the python shell which will print out our versions of the python stack
In [7]: from dataportal.utils.diagnostics import watermark
In [8]: dict(watermark())
Out[8]:
{u'bubblegum': u"FAILED TO DETECT: API 'QString' has already been set to version 1",
u'channelarchiver': '0.0.3',
u'enaml': u'0.9.8',
u'filestore': 'v0.0.3.post0',
u'matplotlib': '1.4.3',
u'metadatastore': 'v0.0.4.post0',
u'numpy': '1.9.2',
u'pandas': '0.16.0',
u'pims': '0.2.2',
u'python': u'2.7.9',
u'pyyaml': '0.2.2',
u'scipy': '0.15.1',
u'six': '1.9.0'}
The `conda list command
Additional information that will help us track down your bug can be obtained by
running conda list which will print the following out to the console.
(Note that this command needs to be run from within your activated conda
environment):
(nikea2)edill@edill-810g:~/dev/python/dataportal (master *$ u+1)$ conda list # packages in environment at /home/edill/anaconda/envs/nikea2: # asv 0.1 <pip> atom (/home/edill/dev/python/atom) 0.3.10 <pip> atom 0.3.9 py27_0 auto-enaml 0.1.0 <pip> backports.ssl-match-hostname 3.4.0.2 <pip> bokeh 0.8.2 np19py27_0 cairo 1.12.18 0 channelarchiver (/home/edill/dev/python/channelarchiver) 0.0.4 <pip> colorama 0.3.3 py27_0 controlsui 0.0.0 <pip> coverage 3.7.1 <pip> coveralls 0.5 <pip> cython 0.22 py27_0 dataportal 0.0.5.post0 <pip> dateutil 2.4.1 py27_0 decorator 3.4.0 py27_0 distribute 0.7.3 <pip> docopt 0.6.2 <pip> docutils 0.12 py27_0 enaml 0.9.8 py27_0 enum34 1.0.4 py27_0 filestore 0.1.0.dev0 <pip> flask 0.10.1 py27_1 freetype 2.4.10 0 funcsigs 0.4 py27_0 gevent 1.0.1 py27_0 gevent-websocket 0.9.3 py27_0 greenlet 0.4.5 py27_0 h5py 2.4.0 np19py27_0 hdf5 1.8.14 0 hexrd-0.3.0.dev-205-gd1d356e dirty <pip> ipython 3.0.0 py27_0 ipython-notebook 3.0.0 py27_1 itsdangerous 0.24 py27_0 jinja2 2.7.3 py27_1 jpeg 8d 0 jsonschema 2.4.0 py27_0 kiwisolver 0.1.3 py27_0 lcms 1.19 0 libpng 1.5.13 1 libsodium 0.4.5 0 libtiff 4.0.2 1 llvm 3.3 0 llvmlite 0.2.2 py27_1 llvmpy 0.12.3 py27_0 lmfit 0.8.3 <pip> markupsafe 0.23 py27_0 matplotlib 1.4.3 np19py27_0 metadatastore 0.1.0.dev0 <pip> mistune 0.5 py27_0 mongoengine 0.8.7 <pip> networkx 1.9.1 py27_0 nose 1.3.4 py27_1 numba 0.12.2 np18py27_0 numpy 1.9.2 py27_0 openssl 1.0.1k 1 pandas 0.16.0 np19py27_1 pil 1.1.7 py27_1 pillow 2.7.0 py27_0 pims 0.2.2 py27_0 pip 6.0.8 py27_0 pixman 0.26.2 0 ply 3.4 py27_0 pockets 0.2.3 <pip> ptyprocess 0.4 py27_0 py2cairo 1.10.0 py27_2 pygments 2.0.2 py27_0 pymongo 2.8 <pip> pyparsing 2.0.3 py27_0 pyqt 4.10.4 py27_0 python 2.7.9 2 python-dateutil 2.4.1 py27_0 pytz 2015.2 py27_0 pyxrf 0.0.0.dev0 <pip> pyyaml 3.11 py27_0 pyzmq 14.5.0 py27_0 qt 4.8.5 0 readline 6.2 2 requests 2.6.0 py27_0 scikit-image 0.10.1 np18py27_0 scikit-xray 0.0.3.post0 <pip> scipy 0.15.1 np19py27_0 setuptools 14.3.1 py27_0 sip 4.15.5 py27_0 six 1.9.0 py27_0 sphinx 1.2.3 py27_0 sphinx-bootstrap-theme 0.4.5 <pip> sphinxcontrib-napoleon 0.3.1 <pip> sqlite 3.8.4.1 1 ssl_match_hostname 3.4.0.2 py27_0 system 5.8 2 terminado 0.5 py27_0 tifffile 0.3.1 np18py27_0 tk 8.5.18 0 tornado 4.1 py27_0 trackpy 0.2.4 py27_0 tzlocal 1.1.2 <pip> ujson 1.33 py27_0 werkzeug 0.10.1 py27_0 xraylib master np19py27_0 yaml 0.1.4 0 zeromq 4.0.4 0 zlib 1.2.8 0