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participant.rb
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participant.rb
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# -*- coding: utf-8 -*-
# == Schema Information
# Schema version: 20130516212715
#
# Table name: participants
#
# being_followed :boolean default(TRUE)
# being_processed :boolean default(FALSE)
# created_at :datetime
# enroll_date :date
# enroll_status_code :integer not null
# enrollment_status_comment :text
# high_intensity :boolean default(FALSE)
# high_intensity_state :string(255)
# id :integer not null, primary key
# lock_version :integer default(0)
# low_intensity_state :string(255)
# p_id :string(36) not null
# p_type_code :integer not null
# p_type_other :string(255)
# pid_age_eligibility_code :integer not null
# pid_comment :text
# pid_entry_code :integer not null
# pid_entry_other :string(255)
# psu_code :integer not null
# ssu :string(255)
# status_info_date :date
# status_info_mode_code :integer not null
# status_info_mode_other :string(255)
# status_info_source_code :integer not null
# status_info_source_other :string(255)
# transaction_type :string(36)
# tsu :string(255)
# updated_at :datetime
#
# A Participant is a living Person who has provided Study data about her/himself or a NCS Child.
# S/he may have been administered a variety of questionnaires or assessments, including household enumeration,
# pregnancy screener, pregnancy questionnaire, etc. Once born, NCS-eligible babies are assigned Participant IDs.
# Every Participant is also a Person. People do not become Participants until they are determined eligible for a pregnancy screener.
class Participant < ActiveRecord::Base
include EligibilityAdjudicator
include NcsNavigator::Core::Mdes::MdesRecord
include NcsNavigator::Core::ImportAware
acts_as_mdes_record :public_id_field => :p_id,
:public_id_generator => NcsNavigator::Core::Mdes::HumanReadablePublicIdGenerator.new(:psu => NcsNavigatorCore.psu)
ncs_coded_attribute :psu, 'PSU_CL1'
ncs_coded_attribute :p_type, 'PARTICIPANT_TYPE_CL1'
ncs_coded_attribute :status_info_source, 'INFORMATION_SOURCE_CL4'
ncs_coded_attribute :status_info_mode, 'CONTACT_TYPE_CL1'
ncs_coded_attribute :enroll_status, 'CONFIRM_TYPE_CL2'
ncs_coded_attribute :pid_entry, 'STUDY_ENTRY_METHOD_CL1'
ncs_coded_attribute :pid_age_eligibility, 'AGE_ELIGIBLE_CL2'
has_many :ppg_details, :order => "created_at DESC"
has_many :ppg_status_histories, :order => "ppg_status_date DESC, created_at DESC"
has_many :low_intensity_state_transition_audits, :class_name => "ParticipantLowIntensityStateTransition", :foreign_key => "participant_id", :dependent => :destroy
has_many :high_intensity_state_transition_audits, :class_name => "ParticipantHighIntensityStateTransition", :foreign_key => "participant_id", :dependent => :destroy
has_many :participant_person_links, :order => 'participant_person_links.created_at'
has_many :people, :through => :participant_person_links
has_many :participant_staff_relationships
has_many :participant_consents, :order => "consent_date DESC"
has_many :events
has_many :response_sets, :inverse_of => :participant
has_many :providers, :through => :people
has_many :pbs_lists, :through => :providers
def self.has_self_link
where('participant_person_links.relationship_code' => 1)
end
def self.from_hospital_type_provider
hospitals = PbsList.is_hospital_type
has_self_link.joins(:pbs_lists).merge(PbsList.is_hospital_type)
end
def hospital?
self.class.from_hospital_type_provider.exists?(self)
end
alias_method :birth_cohort?, :hospital?
# validates_presence_of :person
accepts_nested_attributes_for :ppg_details, :allow_destroy => true
accepts_nested_attributes_for :ppg_status_histories, :allow_destroy => true
scope :in_low_intensity, where("high_intensity is null or high_intensity is false")
scope :in_high_intensity, where("high_intensity is true")
scope :all_for_staff, lambda { |staff_id| joins(:participant_staff_relationships).where("participant_staff_relationships.staff_id = ?", staff_id) }
scope :primary_for_staff, lambda { |staff_id| all_for_staff(staff_id).where("participant_staff_relationships.primary = ?", true) }
scope :all_people_for_self, lambda { |person_id| joins(:participant_person_links).where("participant_person_links.person_id = ? AND participant_person_links.relationship_code = 1", person_id) }
scope :upcoming_births, joins(:ppg_details).where("ppg_details.orig_due_date > '#{Date.today.to_s(:db)}' or ppg_details.due_date_2 > '#{Date.today.to_s(:db)}' or ppg_details.due_date_3 > '#{Date.today.to_s(:db)}'")
delegate :age, :first_name, :last_name, :person_dob, :gender, :upcoming_events, :contact_links, :instruments, :start_instrument, :started_survey, :instrument_for, :to => :person
after_create :set_initial_state_for_recruitment_strategy
##
# Only Hi/Lo strategy uses the low_intensity_state machine.
# If the recruitment_strategy is not Hi/Lo (two_tier_knowledgable)
# then set the participant firmly in the high_intensity_state machine.
def set_initial_state_for_recruitment_strategy
unless NcsNavigatorCore.recruitment_strategy.two_tier_knowledgable?
self.high_intensity = true
self.start_in_high_intensity_arm!
self.high_intensity_conversion! if can_high_intensity_conversion?
end
end
##
# State Machine used to manage relationship with Patient Study Calendar
# for the Low Intensity protocol
state_machine :low_intensity_state, :initial => :pending do
store_audit_trail
before_transition :log_state_change
after_transition :on => :enroll_in_high_intensity_arm, :do => :add_to_high_intensity_protocol
after_transition :on => :birth_event_low, :do => :update_ppg_status_after_birth
after_transition :on => :lose_child, :do => :update_ppg_status_after_child_loss
event :register do
transition :pending => :registered
end
event :assign_to_pregnancy_probability_group do
transition :registered => :in_pregnancy_probability_group
end
event :low_intensity_consent do
transition [:in_pregnancy_probability_group, :registered] => :consented_low_intensity
end
event :follow_low_intensity do
transition [:in_pregnancy_probability_group, :consented_low_intensity, :following_low_intensity] => :following_low_intensity
end
event :impregnate_low do
transition [:in_pregnancy_probability_group, :consented_low_intensity, :following_low_intensity, :moved_to_high_intensity_arm] => :pregnant_low
end
event :lose_child do
transition [:pregnant_low, :in_pregnancy_probability_group, :consented_low_intensity, :following_low_intensity] => :following_low_intensity
end
event :birth_event_low do
transition [:in_pregnancy_probability_group, :consented_low_intensity, :pregnant_low, :following_low_intensity] => :postnatal
end
event :enroll_in_high_intensity_arm do
transition [:in_pregnancy_probability_group, :pregnant_low, :postnatal, :following_low_intensity, :consented_low_intensity] => :moved_to_high_intensity_arm
end
event :start_in_high_intensity_arm do
transition [:pending, :in_pregnancy_probability_group] => :started_in_high_intensity_arm
end
event :move_back_to_low_intensity do
transition [:moved_to_high_intensity_arm] => :following_low_intensity
end
event :start_low_intensity_postnatal_data_collection do
transition [:in_pregnancy_probability_group, :consented_low_intensity, :pregnant_low, :following_low_intensity, :postnatal] => :postnatal
end
end
##
# State Machine used to manage relationship with Patient Study Calendar
# for the High Intensity, Enhanced Household, Provider Based, and Provider Based Subsample protocols
state_machine :high_intensity_state, :initial => :in_high_intensity_arm do
store_audit_trail
before_transition :log_state_change
after_transition :on => :high_intensity_conversion, :do => :process_high_intensity_conversion!
after_transition :on => :pregnancy_one_visit, :do => :process_pregnancy_visit_one!
after_transition :on => :birth_event, :do => :update_ppg_status_after_birth
after_transition :on => :lose_pregnancy, :do => :update_ppg_status_after_child_loss
event :high_intensity_conversion do
transition :in_high_intensity_arm => :converted_high_intensity
end
event :completed_pbs_eligibility_screener do
transition :converted_high_intensity => :pregnancy_one
end
event :non_pregnant_informed_consent do
transition [:converted_high_intensity, :in_high_intensity_arm] => :pre_pregnancy
end
event :pregnant_informed_consent do
transition [:converted_high_intensity, :in_high_intensity_arm] => :pregnancy_one
end
event :late_pregnant_informed_consent do
transition [:converted_high_intensity, :in_high_intensity_arm] => :pregnancy_two
end
event :follow do
transition [:parenthood, :converted_high_intensity, :in_high_intensity_arm, :pre_pregnancy, :following_high_intensity] => :following_high_intensity
end
event :impregnate do
transition [:following_high_intensity, :pre_pregnancy, :converted_high_intensity] => :pregnancy_one
end
event :pregnancy_one_visit do
transition :pregnancy_one => :pregnancy_two
end
event :pregnancy_two_visit do
transition :pregnancy_two => :ready_for_birth
end
event :late_pregnancy_one_visit do
transition [:pregnancy_one, :pregnancy_two] => :ready_for_birth
end
event :lose_pregnancy do
transition [:pregnancy_one, :pregnancy_two, :ready_for_birth] => :following_high_intensity
end
event :birth_event do
transition [:in_high_intensity_arm, :converted_high_intensity, :pregnancy_one, :pregnancy_two, :ready_for_birth] => :parenthood
end
event :birth_cohort do
transition :converted_high_intensity => :ready_for_birth
end
end
##
# Log each time the Participant changes state
# cf. state_machine above
def log_state_change(transition)
event, from, to = transition.event, transition.from_name, transition.to_name
Rails.logger.info("Participant State Change #{id}: #{from} => #{to} on #{event}")
end
##
# Helper method to get the current state of the Participant
# Since there are two state_machines (one for Low Intensity and one for High (or PB or EH))
# this will return the current state based on which arm the Participant is enrolled in
# @return [String]
def state
if low_intensity?
low_intensity_state
else
high_intensity_state
end
end
##
# Helper method to set the current state of the Participant
# Since there are two state_machines (one for Low Intensity and one for High (or PB or EH))
# this will update the state based on which arm the Participant is enrolled in
# @param [String]
def state=(state)
if low_intensity? && (state != high_intensity_state)
self.low_intensity_state = state
else
self.high_intensity_state = state
end
end
##
# After a participant has consented to the high intensity arm
# this method determines the next state for the participant based
# on the ppg status
def process_high_intensity_conversion!
return unless converted_high_intensity?
return if ppg_status.blank?
case ppg_status.local_code
when 1
pregnant_informed_consent!
when 2
non_pregnant_informed_consent!
else
if has_children?
birth_event!
else
follow!
end
end
end
##
# After a pregnancy visit one this method
# determines if the due date is before the next scheduled event date
# in which case moves the participant to the ready for birth state
def process_pregnancy_visit_one!
if due_date && due_date <= next_scheduled_event_date
late_pregnancy_one_visit!
end
end
def self_link
participant_person_links.detect { |ppl| ppl.relationship_code == 1 }
end
private :self_link
##
# The person record associated with this participant, if any, whose
# relationship is self
def person
self_link.try(:person)
end
##
# Create or update the person record associated with this participant whose
# relationship is self
def person=(person)
ppl = self_link
if ppl
ppl.person = person
else
participant_person_links.build(:relationship_code => 1, :person_id => person.id, :participant_id => self.id, :psu => self.psu)
end
end
##
# Convenience method to retrieve the single Participant record for the given person
def self.for_person(person_id)
Participant.all_people_for_self(person_id).first
end
##
# Given attributes for the child person record
# create the child Person record, the child Participant record
# and associate it with this Participant
# @param[Hash]
# @return[Participant]
def create_child_person_and_participant!(person_attrs)
create_child_participant!(Person.create(person_attrs))
end
##
# Given the child person record
# create the child Participant record
# and associate it with this Participant through ParticipantPersonLink
# @param[Hash]
# @return[Participant]
def create_child_participant!(child)
# 6 - NCS Child - Participant Type
child_participant = Participant.create(:psu_code => NcsNavigatorCore.psu, :p_type_code => 6)
child_participant.person = child
child_participant.save!
# 2 - Mother, associating child participant with its mother - ParticipantPersonRelationship
ParticipantPersonLink.create(:participant_id => child_participant.id, :person_id => self.person.id, :relationship_code => 2)
# 8 - Child, associating mother participant with its child - ParticipantPersonRelationship
ParticipantPersonLink.create(:participant_id => self.id, :person_id => child.id, :relationship_code => 8)
# join child to mothers household
HouseholdPersonLink.create(:household_unit_id => self.person.find_or_create_household_unit.id, :person_id => child.id)
child_participant
end
##
# True if the participant has children
# @return[Boolean]
def has_children?
!self.children.blank?
end
##
# Advance the Participant in the state machine
# and then schedule the next event
#
# @see Participant#update_state_to_next_event
# @see Event.schedule_and_create_placeholder
#
# @param psc [PatientStudyCalendar]
# @param event [Event] (optional)
def advance(psc, event = nil)
if event.nil?
event = determine_advance_event
end
if event && self.pending_events.blank?
update_state_to_next_event(event)
# quick and dirty hack to not schedule the Child::Child segment
# if the Participant has performed the final known event in that
# segment - i.e. the 30 month event
if completed_30_month?
Rails.logger.info("Participant [#{self.p_id}] completed 30 month event - not scheduling any new segment in PSC")
else
Event.schedule_and_create_placeholder(psc, self)
end
end
end
##
# If the event to Participant#advance is nil
# determine the next event to use to determine
# advancement. Generally this is the most recent
# event. But this method filters out the Informed
# Consent events since those do not affect
# advancement.
#
# @see Event.chronological
# @return [Event]
def determine_advance_event
events.chronological.select do |e|
e.event_type_code != Event.informed_consent_code
end.last
end
##
# The current pregnancy probability group status for this participant.
#
# This is determined either by the first assigned status from the ppg_details relationship
# or from the most recent ppg_status_histories record.
# Each participant will be associated with a ppg_details record when first screened and
# will have a ppg_status_histories association after the first follow-up. There is a good
# chance that the ppg_status_histories record will be created in tandem with the ppg_details
# when first screened, but this cannot be assured.
#
# The big difference between the two is that the ppg_detail status comes from the PPG_STATUS_CL2
# code list whereas the ppg_status_history status comes from the PPG_STATUS_CL1 code list.
#
# 1 - PPG Group 1: Pregnant and Eligible
# 2 - PPG Group 2: High Probability – Trying to Conceive
# 3 - PPG Group 3: High Probability – Recent Pregnancy Loss
# 4 - PPG Group 4: Other Probability – Not Pregnancy and not Trying
# 5 - PPG Group 5: Ineligible (Unable to Conceive, age-ineligible)
# 6 or nil - PPG: Group 6: Withdrawn
# 6 or 7 - Ineligible Dwelling Unit
#
# @return [NcsCode]
def ppg_status(date = Date.today)
ppg_status_histories.blank? ? ppg_status_from_ppg_details : ppg_status_from_ppg_status_histories(date)
end
def ppg_status_from_ppg_details
ppg_details.blank? ? nil : ppg_details.first.ppg_first
end
private :ppg_status_from_ppg_details
def ppg_status_from_ppg_status_histories(date = Date.today)
psh = ppg_status_histories.where(['ppg_status_date_date <= ?', date]).order(
"ppg_status_date_date DESC, created_at DESC").all
psh.blank? ? ppg_status_histories.first.ppg_status : psh.first.ppg_status
end
private :ppg_status_from_ppg_status_histories
##
# The next segment in PSC for the participant
# based on the current state, pregnancy probability group, and protocol arm
#
# @return [String]
def next_study_segment
return nil if !has_eligible_ppg_status?
low_intensity? ? next_low_intensity_study_segment : next_high_intensity_study_segment
end
##
# The next event for the participant with the date and the event name.
# Returns nil if Participant does not have a next_study_segment (i.e. Not Registered with PSC)
# or if the Participant has no contacts.
#
# (Note that contacts returns an ActiveRecord::Relation and here we all .empty? on that relation
# to determine if there are any contacts for this participant)
#
# @return [ScheduledEvent]
def next_scheduled_event
return nil if next_study_segment.blank? || contacts.empty?
ScheduledEvent.new(:date => next_scheduled_event_date, :event => upcoming_events.first)
end
##
# Based on the current state, pregnancy probability group, and
# the intensity group (hi/lo) determine the next event
# @return [String]
def upcoming_events
events = []
events << next_study_segment if next_study_segment
events
end
##
# Returns all events where event_end_date is null
# @return [Array<Event>]
def pending_events
events.where("event_end_date IS NULL").chronological
end
##
# Returns all events where event_end_date is not null
# @return [Array<Event>]
def completed_events(event_type = nil)
result = events.select { |e| e.closed? }
result = result.select { |e| e.event_type == event_type } if event_type
result
end
##
# True if completed events has event of given type
# @param [NcsCode] - Event Type
# @return [Boolean]
def completed_event?(event_type)
completed_events(event_type).count > 0
end
def completed_30_month?
completed_event?(NcsCode.for_list_name_and_local_code('EVENT_TYPE_CL1', 36))
end
##
# If an event is missed this method will do the following:
# 1. Closed the current pending event (i.e. set the event_end_date to now)
# 2. Set the disposition for that event to 'Out if Window'
# 3. Cancel scheduled activity in PSC with reason of 'Out of Window'
# 4. If there are no remaining pending events, schedule and create placeholder for the next event
def mark_event_out_of_window(psc, event)
resp = nil
if event
event.mark_out_of_window
event.close!
event.cancel_activities(psc, "Missed Event - Out of Window")
resp = advance(psc, event)
end
resp
end
##
# For the given event, update the Participant's state accordingly
# @param [Event]
def update_state_to_next_event(event)
case event.event_type.local_code
when 34
if NcsNavigatorCore.recruitment_strategy.pbs?
if (eligible_for_pbs? || eligible_for_birth_cohort?) && hospital?
birth_cohort!
else
completed_pbs_eligibility_screener!
end
end
when 4, 5, 6, 9, 29
# Pregnancy Screener Events or PBS Eligibility Screener
if can_assign_to_pregnancy_probability_group?
assign_to_pregnancy_probability_group!
end
when 10
# Informed Consent
if NcsNavigatorCore.recruitment_strategy.pbs?
if (eligible_for_pbs? || eligible_for_birth_cohort?) && hospital?
birth_cohort!
else
completed_pbs_eligibility_screener!
end
else
low_intensity_consent! if can_low_intensity_consent?
end
when 32
# Low to High Conversion
high_intensity_conversion! if can_high_intensity_conversion?
when 33
# Lo I Quex
follow_low_intensity! if can_follow_low_intensity?
when 7,8
# Pregnancy Probability
follow! if can_follow? && high_intensity?
when 11, 12
# Pre-Pregnancy
non_pregnant_informed_consent! if can_non_pregnant_informed_consent?
follow! if can_follow?
when 13, 14
# Pregnancy Visit 1
pregnancy_one_visit! if can_pregnancy_one_visit?
when 15, 16
# Pregnancy Visit 2
pregnancy_two_visit! if can_pregnancy_two_visit?
when 18, 23, 24, 25, 26, 27, 28, 30, 31, 36, 37, 38
# Birth and Post-natal
if low_intensity?
birth_event_low! if can_birth_event_low?
else
birth_event! if can_birth_event?
end
end
update_pregnancy_state(event)
end
##
# Called from update_state_to_next_event
#
# Some events get new information about the Participant's
# pregnancy state. If the given event is one of these events
# (PPG FU, Pre-Preg, Screener)
# check to see if we know the Participant to be pregnant
# and update the Participant's state accordingly.
# @param [Event]
def update_pregnancy_state(event)
prenatal_ppg_status_determining_events = [4,5,6,9,29,7,8,11,12]
if prenatal_ppg_status_determining_events.include?(event.event_type.local_code)
date = event.event_end_date.blank? ? event.event_start_date : event.event_end_date
if known_to_be_pregnant?(date)
if(low_intensity? && can_impregnate_low? &&
!due_date_is_greater_than_follow_up_interval(date))
impregnate_low!
end
if high_intensity? && can_impregnate?
impregnate!
end
end
end
end
private :update_pregnancy_state
##
# Display text from the NcsCode list PARTICIPANT_TYPE_CL1
# cf. p_type belongs_to association
# @return [String]
def participant_type
p_type.to_s
end
##
# The number of months to wait before the next event
# @return [Date]
def interval
case
when pending?, registered?, newly_moved_to_high_intensity_arm?, pre_pregnancy?, (can_consent? && eligible_for_low_intensity_follow_up?), pregnancy_one?
0
when pregnancy_two?
60.days
when followed?, in_pregnancy_probability_group?, following_low_intensity?
follow_up_interval
when in_pregnant_state?, postnatal?
due_date ? 1.day : 0
else
0
end
end
##
# The number of months to wait before the next Follow-Up event
# @return [Date]
def follow_up_interval
if should_take_low_intensity_questionnaire?
0
elsif low_intensity? or recent_loss?
6.months
else
3.months
end
end
def due_date_is_greater_than_follow_up_interval(date)
due_date && due_date > follow_up_interval.since(date)
end
##
# The known due date for the pregnant participant, used to schedule the Birth Visit
# @return [Date]
def due_date
dt = nil
if ppg_details.first && ppg_details.first.due_date
begin
dt = Date.parse(ppg_details.first.due_date)
rescue
# NOOP - date is unparseable
end
end
dt
end
def child_participant?
self.p_type_code == 6 || self.p_type_code == 12
end
##
# Only Participants who are Pregnant or Trying to become pregnant
# should be presented with the consent form, otherwise they should be ineligible
# or simply following
def can_consent?
pregnant_or_trying?
end
##
# Returns true if the participant is in PPG 1 or 2 (pregnant_or_trying) and
# has not given consent (or has withdrawn)
def requires_consent
!consented?
end
##
# Returns true if the participant is not ineligible and
# has consented
def in_study?
!ineligible? && consented?
end
##
# Return the most recent ParticipantConsent record
# for this Participant as determined by the
# consent_date or consent_withdraw_date.
#
# There is a possibility that a ParticipantConsent has
# been started by not completed and in that case we
# do not use those ParticipantConsent records to determine
# most recent.
#
# @return[ParticipantConsent]
def most_recent_consent
sortable_consents = participant_consents.select { |c| c.consent_date || c.consent_withdraw_date_date }
sortable_consents.sort_by { |c| c.consent_date || c.consent_withdraw_date_date }.last
end
##
# Returns true if a participant_consent record exists for the given consent type
# and consent_given_code is true and consent_withdraw_code is not true.
# If no consent type is given, then check if any consent record exists
# @return [Boolean]
def consented?
return false unless most_recent_consent
most_recent_consent.consented? && !most_recent_consent.withdrawn?
end
##
# Returns true for a child participant whose most recent
# participant_consent record of consent_form_type_code
# birth to six months has consent_given_code equal to NcsCode::YES.
# @see ParticipantConsent#consented?
# @return [Boolean]
def consented_birth_to_six_months?
child_consented? ParticipantConsent.child_consent_birth_to_6_months_form_type_code
end
##
# Returns true for a child participant whose most recent
# participant_consent record of consent_form_type_code
# birth to six months has consent_given_code equal to NcsCode::YES.
# @see ParticipantConsent#consented?
# @return [Boolean]
def consented_six_months_to_age_of_majority?
child_consented? ParticipantConsent.child_consent_6_months_to_age_of_majority_form_type_code
end
def child_consented?(consent_form_type)
return false unless child_participant?
return false unless most_recent_consent.try(:consent_form_type_code) == consent_form_type.local_code
most_recent_consent.consented? && !most_recent_consent.withdrawn?
end
private :child_consented?
##
# Returns true if a participant_consent record exists for the given consent type
# and consent_given_code is true and consent_withdraw_code is not true.
# If no consent type is given, then check if any consent record exists
# @return [Boolean]
def reconsented?
return false unless most_recent_consent
most_recent_consent.reconsented? && !most_recent_consent.withdrawn?
end
##
# Returns true if a participant_consent record exists for the given consent type
# and consent_withdraw_code is true.
# If no consent type is given, then check if any consent record exists that was withdrawn
# @return [Boolean]
def withdrawn?
return false unless most_recent_consent
most_recent_consent.withdrawn?
end
def consented_environmental?
consented_sample?(ParticipantConsentSample::ENVIRONMENTAL)
end
def consented_biospecimen?
consented_sample?(ParticipantConsentSample::BIOSPECIMEN)
end
def consented_genetic?
consented_sample?(ParticipantConsentSample::GENETIC)
end
##
# True if the ParticipantConsentSample of type for the
# most recent consent is consented?
# @see ParticipantConsentSample#consented?
# @param [Integer]
# @return [Boolean]
def consented_sample?(sample_consent_type_code)
sample_consent(sample_consent_type_code).try(:consented?)
end
private :consented_sample?
##
# Return the ParticipantConsentSample of type for the
# most recent consent
# @param [Integer]
# @return [ParticipantConsentSample]
def sample_consent(sample_consent_type_code)
if most_recent_consent
most_recent_consent.participant_consent_samples.where(
:sample_consent_type_code => sample_consent_type_code).first
end
end
private :sample_consent
##
# Returns true if participant enroll status is 'Yes' (i.e. local_code == 1)
# @return [Boolean]
def enrolled?
enroll_status.try(:local_code) == NcsCode::YES
end
##
# Returns true if participant enroll status is 'No' (i.e. local_code == 2)
# @return [Boolean]
def unenrolled?
enroll_status.try(:local_code) == NcsCode::NO
end
##
# Unenrolling does the following:
# 1. Sets the participant enroll status to No
# 2. Cancels all scheduled activities in PSC
# 3. Closes or Deletes all pending events
# @param [PatientStudyCalendar]
def unenroll(psc, reason = "Participant has been un-enrolled from the study.")
self.enrollment_status_comment = reason
self.pending_events.each { |e| e.cancel_and_close_or_delete!(psc, reason) }
self.update_enrollment_status(false)
end
##
# Unenroll and save!
# @param [PatientStudyCalendar]
def unenroll!(psc, reason)
self.unenroll(psc, reason)
self.save!
end
##
# Sets the enroll status to Yes (i.e. local_code = 1)
# and the enroll_date to the given date
# @see Participant#update_enrollment_status
# @param enroll_date [Date]
def enroll(enroll_date)
update_enrollment_status(true, enroll_date)
end
##
# Enroll and save!
# @param enroll_date [Date]
def enroll!(enroll_date)
self.enroll(enroll_date)
self.save!
end
def nullify_pending_events!(psc, reason = "Pending event has been deleted.")
self.pending_events.each { |e| e.cancel_and_close_or_delete!(psc, reason) }
end
##
# Consenting to the study does the following things
# 1. update the enrollment status for the participant
# @see Participant#enroll!
def consent_to_study!(consent = most_recent_consent)
enroll!(consent.consent_date) unless self.enrolled?
end
##
# Withdrawing from the study does the following things
# 1. updates the enrollment status for the participant
# 2. cancels or deletes the pending events
# 3. creates a ppg status history record of type withdrawn
# @see Participant#update_enrollment_status
# @see Participant#create_withdrawn_ppg_status
def withdraw_from_study!(consent = most_recent_consent)
self.update_enrollment_status(false)
create_withdrawn_ppg_status(consent.try(:consent_date))
self.children.each do |child|
child.participant.try(:withdraw_from_study!, consent)
end
self.save!
end
##
# If the most recent status history is not withdrawn create
# a PpgStatusHistory record for the participant
def create_withdrawn_ppg_status(date)
ppg_status_date = date.nil? ? Date.today : date
unless self.ppg_status_histories.first.try(:ppg_status_code) == PpgStatusHistory::WITHDRAWN
PpgStatusHistory.create(:participant => self,
:psu => self.psu,
:ppg_status_date => ppg_status_date,
:ppg_status_code => PpgStatusHistory::WITHDRAWN)
end
end
##
# Sets the enroll_status, enroll_date, and being_followed
# attributes on the Participant
# @param [Boolean]
# @param [Date]
def update_enrollment_status(enrollment_state, date = nil)
self.being_followed = enrollment_state
status = enrollment_state ? NcsCode::YES : NcsCode::NO
self.enroll_status = NcsCode.for_attribute_name_and_local_code(:enroll_status_code, status)
self.enroll_date = date
end
##
# Sets the enroll_status, enroll_date, and being_followed
# attributes on the Participant
# @param [Boolean]
# @param [Date]
def update_enrollment_status!(enrollment_state, date = nil)
self.update_enrollment_status(enrollment_state, date)
self.save!
end
##
# Removing from active followup does the following:
# 1. Sets the participant being_followed flag to false
# 2. Cancels all scheduled activities in PSC
# 3. Closes or Deletes all pending events
# @param [PatientStudyCalendar]
def remove_from_active_followup(psc, reason = "Participant is not actively being followed in the study.")
self.enrollment_status_comment = reason
self.pending_events.each do |e|
e.cancel_and_close_or_delete!(psc, reason)
end
self.being_followed = false
end
def remove_from_active_followup!(psc, reason)
self.remove_from_active_followup(psc, reason)
self.save!
end
##
# Only Participants who are in a state of pending and have not yet registered with PSC can register
def can_register_with_psc?(psc)
can_register? && !psc.is_registered?(self)
end
##
# Participants who are eligible for the protocol but not actively trying nor pregnant
# should be followed to see if they ever move to the 'can_consent' state
def following?
eligible_for_ppg_follow_up?
end
alias :followed? :following?
##
# Participants are known to be pregnant if in the proper Pregnancy Probability Group
def known_to_be_pregnant?(date = Date.today)
pregnant?(date)
end
##
# Participants are known to have experienced child loss if in the proper Pregnancy Probability Group
def known_to_have_experienced_child_loss?(date = Date.today)
recent_loss?(date)
end
##
# Any low intensity participant who has been consented and is in PPG 1 or 2 should
# take the Lo I Quex before taking the ppg follow up every six months.
# A pregnant woman whose due_date is > 6 months out should take this Lo I Quex too
def should_take_low_intensity_questionnaire?
# TODO: determine if due date is > 6 mos
low_intensity? && pregnant_or_trying? && !completed_event?(NcsCode.low_intensity_data_collection)
end
##
# Participant should be screened if they have not completed either
# the Pregnancy Screener or PBS Eligibility Screener event
def should_be_screened?
new_participant_in_study? &&
!completed_event?(NcsNavigatorCore.recruitment_strategy.pbs? ?
NcsCode.pbs_eligibility_screener :
NcsCode.pregnancy_screener)
end
##
# Check if an informed consent event exists on the given date.
# Return false if an event is already scheduled on that date.
# @param date [Date]
# @return [Boolean]
def date_available_for_informed_consent_event?(date)
ics = events.where(:event_type_code => Event.informed_consent_code)