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Issues: NVIDIA-Genomics-Research/GenomeWorks

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65 Open 153 Closed
65 Open 153 Closed
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Issues list

GenomeWorks fails to compile with CUDA 12
#668 opened Aug 30, 2023 by quim0
1
[cudapoa] Kernel error
#666 opened Feb 26, 2022 by rvaser
[cudamapper] compared to minimap2
#665 opened Sep 23, 2021 by wzboy1984
cudamapper terminates while doing an all-vs-all mapping
#664 opened Sep 20, 2021 by alanorth
Floating Point Exception in Racon
#662 opened Sep 9, 2021 by schorlton
cudamapper error using bam output
#656 opened Jul 5, 2021 by RichardCorbett
2
[pygenomeworks] logger chatter. bug Something isn't working cudapoa GPU-based partial order alignment
#648 opened May 8, 2021 by iiSeymour
@vellamike @ohadmo
2
format.h is broken and breaks CUDA compile bug Something isn't working sdk Overall SDK related improvements
#637 opened Feb 24, 2021 by cement-head v0.6.0
@ahehn-nv
3
[cudaaligner] Disabled caching device-allocator may trigger OOM in cudaaligner bug Something isn't working cudaaligner GPU-based aligner
#630 opened Feb 16, 2021 by ahehn-nv
[logging] reduce logging overhead enhancement New feature or request sdk Overall SDK related improvements
#616 opened Dec 10, 2020 by tijyojwad
[cudapoa] make maximum number of edges per node configurable cudapoa GPU-based partial order alignment enhancement New feature or request
#607 opened Nov 30, 2020 by r-mafi
terminate called after throwing an instance of 'std::runtime_error'
#603 opened Nov 26, 2020 by bellstwohearted
1
How to install GenomeWorks on local machine? documentation Improvements or additions to documentation
#593 opened Oct 28, 2020 by kountaydwivedi
10
[cudapoa] overlapping vertical/diagonal update of score matrix with horizontal update cudapoa GPU-based partial order alignment enhancement New feature or request
#587 opened Oct 15, 2020 by r-mafi
@r-mafi
[Documentation] Add code blocks instructions for dependencies setup documentation Improvements or additions to documentation
#583 opened Oct 6, 2020 by ohadmo
@ohadmo
[cudaextender] Performance analysis cudaextender GPU-based seed extension algorithms
#580 opened Oct 1, 2020 by atadkase
[cudaextender] Kernel optimizations cudaextender GPU-based seed extension algorithms
#579 opened Oct 1, 2020 by atadkase
[cudaextender] Make output compression async cudaextender GPU-based seed extension algorithms
#578 opened Oct 1, 2020 by atadkase
[cudaextender] Explore configurability of kernel launch parameters. cudaextender GPU-based seed extension algorithms
#577 opened Oct 1, 2020 by atadkase
[cudaextender] Calculate memory limits based on datastructures used. cudaextender GPU-based seed extension algorithms
#576 opened Oct 1, 2020 by atadkase
[cudaextender] Check if entropy calculation can be done using a float. cudaextender GPU-based seed extension algorithms
#575 opened Oct 1, 2020 by atadkase
[cudaextender] Replace cudaextender's hardcoded encoding scheme with cudasequence cudaextender GPU-based seed extension algorithms
#574 opened Oct 1, 2020 by atadkase
[cmake] move version file configuration into base sdk Overall SDK related improvements
#572 opened Sep 24, 2020 by tijyojwad v0.6.0
[pygenomeworks] evaluate_paf script is too slow to be practical for very large PAF files
#571 opened Sep 23, 2020 by edawson
[pygenomeworks] Support reading compressed PAF as input enhancement New feature or request
#559 opened Sep 15, 2020 by edawson
ProTip! Exclude everything labeled bug with -label:bug.