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add FedBN Implementation on NVFlare research folder - a local batch normalization federated learning method #2524

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a25cf54
add research/fedbn
MinghuiChen43 Apr 20, 2024
37587c5
delete redudant controller and correct figs requirements
MinghuiChen43 Apr 24, 2024
a682140
update plot_requirements
MinghuiChen43 Apr 25, 2024
1a9db50
rewrite fedbn
MinghuiChen43 Apr 27, 2024
98b30a8
update jobs
MinghuiChen43 Apr 28, 2024
113b5ad
remove workspace
MinghuiChen43 Apr 28, 2024
69c9a34
update README
MinghuiChen43 Apr 28, 2024
de454b4
simplify job simulator_run to take only one workspace parameter. (#2528)
yhwen Apr 24, 2024
dc5ef27
Add missing client api test jobs (#2535)
YuanTingHsieh Apr 29, 2024
a5abb01
Fixed the simulator server workspace root dir (#2533)
yhwen Apr 30, 2024
4fac311
Improve InProcessClientAPIExecutor (#2536)
chesterxgchen Apr 30, 2024
c83039b
FIX MLFLow and Tensorboard Output to be consistent with new Workspace…
chesterxgchen Apr 30, 2024
f76f71b
Fix decorator issue (#2542)
YuanTingHsieh May 1, 2024
394e137
update create and run job script
MinghuiChen43 May 1, 2024
6655321
FLModel summary (#2544)
chesterxgchen May 1, 2024
feab6e6
remove jobs folder
MinghuiChen43 May 1, 2024
0c35216
expose aggregate_fn to users for overwriting (#2539)
SYangster Apr 30, 2024
985182b
handle cases where the script with relative path in Script Runner (#2…
chesterxgchen May 2, 2024
1a8dd1b
Lr newton raphson (#2529)
zhijinl May 2, 2024
3865a59
Add information about dig (bind9-dnsutils) in the document
IsaacYangSLA May 1, 2024
2a36592
format update
ZiyueXu77 May 2, 2024
514bb03
Update KM example, add 2-stage solution without HE (#2541)
ZiyueXu77 May 2, 2024
f251451
Update monai readme to remove logging.conf (#2552)
YuanTingHsieh May 6, 2024
46b8d2a
MONAI mednist example (#2532)
holgerroth May 6, 2024
e4dbfc4
Improve AWS cloud launch script
IsaacYangSLA May 1, 2024
42afc68
Add in process client api tests (#2549)
YuanTingHsieh May 7, 2024
0d71db7
Add client controller executor (#2530)
SYangster May 7, 2024
2279fa8
Add option in dashboard cli for AWS vpc and subnet
IsaacYangSLA May 8, 2024
5f2c9be
add note on README visualization
MinghuiChen43 May 9, 2024
d943892
update README
MinghuiChen43 May 9, 2024
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update readme
MinghuiChen43 May 9, 2024
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update readme
MinghuiChen43 May 9, 2024
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update readme
MinghuiChen43 May 9, 2024
8f187eb
[2.5] Clean up to allow creation of nvflare light (#2573)
yanchengnv May 9, 2024
7d133c9
Enable patch and build for nvflight (#2574)
IsaacYangSLA May 9, 2024
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verified commit
MinghuiChen43 May 10, 2024
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Merge branch 'main' into main
ZiyueXu77 May 10, 2024
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201 changes: 201 additions & 0 deletions research/fedbn/LICENSE
@@ -0,0 +1,201 @@
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81 changes: 81 additions & 0 deletions research/fedbn/README.md
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# FedBN: Federated Learning on Non-IID Features via Local Batch Normalization

Welcome to the repository for FedBN, a federated learning algorithm designed to address the feature shift problem when aggregating models across different data distributions.

###### Abstract:

> In this work, we propose an effective method that uses local batch normalization to alleviate the feature shift before averaging models. The resulting scheme, called FedBN, outperforms both classical FedAvg and FedProx on our extensive experiments. These empirical results are supported by a convergence analysis that shows in a simplified setting that FedBN has a faster convergence rate than FedAvg.

## License
This project is open-sourced under the Apache v2 License. The codebase builds upon the initial work shared at [FedBN](https://github.com/med-air/FedBN).

## Setup Instructions

To set up the environment for training, execute the following commands:
```
pip install --upgrade pip
pip install -r ./requirements.txt
```

## Running the code

### Initial Configuration

Ensure all shell scripts are executable:
```
find . -name ".sh" -exec chmod +x {} \;
```

Set the Python path to recognize the FedBN modules:
```
export PYTHONPATH=${PYTHONPATH}:${PWD}/..
```

Data Preparation

Download the necessary datasets by running:
```
./prepare_data.sh
```

# Run FedBN on different data splits

FedBN (8 clients). Here we run for 50 rounds, with 4 local epochs.
```
cd ./cifar10_sim_fedbn
./run_cifar10_sim_fedbn.sh
```

Execution

Run the FedBN simulation with the following command:
```
./run_simulator.sh cifar10_fedbn 1.0 8 8
```

> **_NOTE:_** The RESULT_ROOT=/tmp/nvflare/sim_cifar10 is set in run_simulator.sh


## Visualizing Results
To visualize training losses, use the plot_tensorboard_event.py script located in:
[./custom/figs/plot_tensorboard_events.py](./custom/figs/plot_tensorboard_events.py).

> **_NOTE:_** Ensure you have the necessary plotting libraries by installing them from: [./custom/figs/plot-requirements.txt](./custom/figs/plot-requirements.txt) to plot.

Below is an example of the loss visualization output:
![FedBN Loss Results](./custom/figs/savefig_example.png)


## Citation
If you find the code and dataset useful, please cite our paper.
```latex
@inproceedings{
li2021fedbn,
title={Fed{\{}BN{\}}: Federated Learning on Non-{\{}IID{\}} Features via Local Batch Normalization},
author={Xiaoxiao Li and Meirui Jiang and Xiaofei Zhang and Michael Kamp and Qi Dou},
booktitle={International Conference on Learning Representations},
year={2021},
url={https://openreview.net/pdf?id=6YEQUn0QICG}
}
```

@@ -0,0 +1,34 @@
{
"format_version": 2,
"TRAIN_SPLIT_ROOT": "/tmp/cifar10_splits/cifar10_fedbn_alpha1.0_bd52371e-8aaf-4850-a5c9-33cef2d6131c",
"AGGREGATION_EPOCHS": 4,
"executors": [
{
"tasks": [
"train",
"submit_model",
"validate"
],
"executor": {
"id": "Executor",
"path": "nvflare.app_common.executors.model_learner_executor.ModelLearnerExecutor",
"args": {
"learner_id": "cifar10-learner"
}
}
}
],
"task_result_filters": [],
"task_data_filters": [],
"components": [
{
"id": "cifar10-learner",
"path": "custom.pt.learners.CIFAR10ModelLearner",
"args": {
"train_idx_root": "{TRAIN_SPLIT_ROOT}",
"aggregation_epochs": "{AGGREGATION_EPOCHS}",
"lr": 0.01
}
}
]
}
@@ -0,0 +1,71 @@
{
"format_version": 2,
"min_clients": 8,
"num_rounds": 50,
"TRAIN_SPLIT_ROOT": "/tmp/cifar10_splits/cifar10_fedbn_alpha1.0_bd52371e-8aaf-4850-a5c9-33cef2d6131c",
"alpha": 1.0,
"server": {
"heart_beat_timeout": 600
},
"task_data_filters": [],
"task_result_filters": [],
"components": [
{
"id": "data_splitter",
"path": "pt.utils.cifar10_data_splitter.Cifar10DataSplitter",
"args": {
"split_dir": "{TRAIN_SPLIT_ROOT}",
"num_sites": "{min_clients}",
"alpha": "{alpha}"
}
},
{
"id": "persistor",
"name": "PTFileModelPersistor",
"args": {
"model": {
"path": "custom.pt.networks.cifar10_nets.ModerateBNCNN",
"args": {}
}
}
},
{
"id": "model_selector",
"name": "IntimeModelSelector",
"args": {}
},
{
"id": "model_locator",
"name": "PTFileModelLocator",
"args": {
"pt_persistor_id": "persistor"
}
},
{
"id": "json_generator",
"name": "ValidationJsonGenerator",
"args": {}
}
],
"workflows": [
{
"id": "fedbn_ctl",
"path": "custom.fedbn.FedBN",
"args": {
"min_clients": "{min_clients}",
"num_rounds": "{num_rounds}",
"persistor_id": "persistor"
}
},
{
"id": "cross_site_model_eval",
"name": "CrossSiteModelEval",
"args": {
"model_locator_id": "model_locator",
"submit_model_timeout": 600,
"validation_timeout": 6000,
"cleanup_models": true
}
}
]
}