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Unreliable cryptacular dependency #170

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chenyangyu1988 opened this issue Feb 27, 2019 · 9 comments
Closed

Unreliable cryptacular dependency #170

chenyangyu1988 opened this issue Feb 27, 2019 · 9 comments

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@chenyangyu1988
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Installing collected packages: pbkdf2, cryptacular, zope.interface, transaction, SQLAlchemy, zope.sqlalchemy, webob, venusian, plaster, hupper, zope.deprecation, PasteDeploy, plaster-pastedeploy, translationstring, pyramid, oauthlib, requests-oauthlib, anykeystore, defusedxml, python3-openid, velruse, repoze.sendmail, pyramid-mailer, wtforms, wtforms-recaptcha, apex, click, future, hypothesis, joblib, numpy, typing, typing-extensions, protobuf, onnx, pytz, python-dateutil, pandas, scipy, tqdm, torch, torchtext, tensorboardX, pytext-nlp
Running setup.py install for pbkdf2 ... -� �done
Running setup.py install for cryptacular ... -� �\� �|� �error
Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-install-8smael84/cryptacular/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-record-ouir87qq/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/cryptacular
copying cryptacular/init.py -> build/lib.linux-x86_64-3.6/cryptacular
creating build/lib.linux-x86_64-3.6/cryptacular/pbkdf2
copying cryptacular/pbkdf2/init.py -> build/lib.linux-x86_64-3.6/cryptacular/pbkdf2
copying cryptacular/pbkdf2/test_pbkdf2.py -> build/lib.linux-x86_64-3.6/cryptacular/pbkdf2
creating build/lib.linux-x86_64-3.6/cryptacular/bcrypt
copying cryptacular/bcrypt/test_bcrypt.py -> build/lib.linux-x86_64-3.6/cryptacular/bcrypt
copying cryptacular/bcrypt/init.py -> build/lib.linux-x86_64-3.6/cryptacular/bcrypt
creating build/lib.linux-x86_64-3.6/cryptacular/crypt
copying cryptacular/crypt/test_crypt.py -> build/lib.linux-x86_64-3.6/cryptacular/crypt
copying cryptacular/crypt/init.py -> build/lib.linux-x86_64-3.6/cryptacular/crypt
creating build/lib.linux-x86_64-3.6/cryptacular/core
copying cryptacular/core/test_core.py -> build/lib.linux-x86_64-3.6/cryptacular/core
copying cryptacular/core/init.py -> build/lib.linux-x86_64-3.6/cryptacular/core
running egg_info
writing cryptacular.egg-info/PKG-INFO
writing dependency_links to cryptacular.egg-info/dependency_links.txt
writing namespace_packages to cryptacular.egg-info/namespace_packages.txt
writing requirements to cryptacular.egg-info/requires.txt
writing top-level names to cryptacular.egg-info/top_level.txt
reading manifest file 'cryptacular.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cryptacular.egg-info/SOURCES.txt'
copying cryptacular/bcrypt/_bcrypt.c -> build/lib.linux-x86_64-3.6/cryptacular/bcrypt
running build_ext
building 'cryptacular.bcrypt._bcrypt' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/crypt_blowfish-1.2
creating build/temp.linux-x86_64-3.6/cryptacular
creating build/temp.linux-x86_64-3.6/cryptacular/bcrypt
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/usr/local/include/python3.6m -c crypt_blowfish-1.2/crypt_blowfish.c -o build/temp.linux-x86_64-3.6/crypt_blowfish-1.2/crypt_blowfish.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/usr/local/include/python3.6m -c crypt_blowfish-1.2/crypt_gensalt.c -o build/temp.linux-x86_64-3.6/crypt_blowfish-1.2/crypt_gensalt.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/usr/local/include/python3.6m -c crypt_blowfish-1.2/wrapper.c -o build/temp.linux-x86_64-3.6/crypt_blowfish-1.2/wrapper.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/usr/local/include/python3.6m -c cryptacular/bcrypt/_bcrypt.c -o build/temp.linux-x86_64-3.6/cryptacular/bcrypt/_bcrypt.o
In file included from /usr/local/include/python3.6m/Python.h:39:0,
from cryptacular/bcrypt/_bcrypt.c:26:
crypt_blowfish-1.2/crypt.h:17:23: fatal error: gnu-crypt.h: No such file or directory
#include <gnu-crypt.h>
^
compilation terminated.
error: command 'gcc' failed with exit status 1
@mcarilli
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mcarilli commented Feb 28, 2019 •
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I have no idea what this is. It looks completely unrelated.

@cskyan
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cskyan commented Mar 27, 2019

If you were using Anaconda please try conda install cryptacular before you install apex. It works for me.

@mschmill
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Why was this closed? I just tried to install apex on a clean GCP gpu instance and it gets this error. Installing cryptacular with conda prior to apex does not work.

@ptrblck
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ptrblck commented May 23, 2019

@mschmill Do you get this error running the setup.py to install apex?
If so, could you please post the terminal output so that we can have a look?
I'm currently unsure how cryptacular is related to apex, as it's not a dependency.

@mschmill
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I am attempting to install apex from pip:

$ pip install apex --user
Collecting apex
Requirement already satisfied: velruse>=1.0.3 in ./.local/lib/python3.7/site-packages (from apex) (1.1.1)
Requirement already satisfied: pyramid>1.1.2 in ./.local/lib/python3.7/site-packages (from apex) (1.10.4)
Requirement already satisfied: pyramid-mailer in ./.local/lib/python3.7/site-packages (from apex) (0.15.1)
Requirement already satisfied: requests in /opt/anaconda3/lib/python3.7/site-packages (from apex) (2.21.0)
Requirement already satisfied: wtforms in ./.local/lib/python3.7/site-packages (from apex) (2.2.1)
Collecting cryptacular (from apex)
  Using cached https://files.pythonhosted.org/packages/73/bd/714b3fbfb3392d6b4e658638d9b74f77ce1072725209c08a6becd90836a7/cryptacular-1.4.1.tar.gz
Requirement already satisfied: zope.sqlalchemy in ./.local/lib/python3.7/site-packages (from apex) (1.1)
Requirement already satisfied: wtforms-recaptcha in ./.local/lib/python3.7/site-packages (from apex) (0.3.2)
Requirement already satisfied: anykeystore in ./.local/lib/python3.7/site-packages (from velruse>=1.0.3->apex) (0.2)
Requirement already satisfied: python3-openid in ./.local/lib/python3.7/site-packages (from velruse>=1.0.3->apex) (3.1.0)
Requirement already satisfied: requests-oauthlib in /opt/anaconda3/lib/python3.7/site-packages (from velruse>=1.0.3->apex) (1.2.0)
Requirement already satisfied: translationstring>=0.4 in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (1.3)
Requirement already satisfied: plaster in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (1.0)
Requirement already satisfied: plaster-pastedeploy in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (0.7)
Requirement already satisfied: webob>=1.8.3 in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (1.8.5)
Requirement already satisfied: zope.deprecation>=3.5.0 in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (4.4.0)
Requirement already satisfied: hupper>=1.5 in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (1.6.1)
Requirement already satisfied: setuptools in /opt/anaconda3/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (40.8.0)
Requirement already satisfied: zope.interface>=3.8.0 in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (4.6.0)
Requirement already satisfied: venusian>=1.0 in ./.local/lib/python3.7/site-packages (from pyramid>1.1.2->apex) (1.2.0)
Requirement already satisfied: repoze.sendmail>=4.1 in ./.local/lib/python3.7/site-packages (from pyramid-mailer->apex) (4.4.1)
Requirement already satisfied: transaction in ./.local/lib/python3.7/site-packages (from pyramid-mailer->apex) (2.4.0)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /opt/anaconda3/lib/python3.7/site-packages (from requests->apex) (3.0.4)
Requirement already satisfied: certifi>=2017.4.17 in /opt/anaconda3/lib/python3.7/site-packages (from requests->apex) (2019.3.9)
Requirement already satisfied: idna<2.9,>=2.5 in /opt/anaconda3/lib/python3.7/site-packages (from requests->apex) (2.8)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /opt/anaconda3/lib/python3.7/site-packages (from requests->apex) (1.24.1)
Requirement already satisfied: pbkdf2 in ./.local/lib/python3.7/site-packages (from cryptacular->apex) (1.3)
Requirement already satisfied: SQLAlchemy>=0.5.1 in /opt/anaconda3/lib/python3.7/site-packages (from zope.sqlalchemy->apex) (1.3.1)
Requirement already satisfied: defusedxml in /opt/anaconda3/lib/python3.7/site-packages (from python3-openid->velruse>=1.0.3->apex) (0.5.0)
Requirement already satisfied: oauthlib>=3.0.0 in /opt/anaconda3/lib/python3.7/site-packages (from requests-oauthlib->velruse>=1.0.3->apex) (3.0.1)
Requirement already satisfied: PasteDeploy>=2.0 in ./.local/lib/python3.7/site-packages (from plaster-pastedeploy->pyramid>1.1.2->apex) (2.0.1)
Building wheels for collected packages: cryptacular
  Building wheel for cryptacular (setup.py) ... error
  Complete output from command /opt/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-g5jfjni4/cryptacular/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-5zxnev_z --python-tag cp37:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.7
  creating build/lib.linux-x86_64-3.7/cryptacular
  copying cryptacular/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular
  creating build/lib.linux-x86_64-3.7/cryptacular/core
  copying cryptacular/core/test_core.py -> build/lib.linux-x86_64-3.7/cryptacular/core
  copying cryptacular/core/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/core
  creating build/lib.linux-x86_64-3.7/cryptacular/pbkdf2
  copying cryptacular/pbkdf2/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/pbkdf2
  copying cryptacular/pbkdf2/test_pbkdf2.py -> build/lib.linux-x86_64-3.7/cryptacular/pbkdf2
  creating build/lib.linux-x86_64-3.7/cryptacular/crypt
  copying cryptacular/crypt/test_crypt.py -> build/lib.linux-x86_64-3.7/cryptacular/crypt
  copying cryptacular/crypt/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/crypt
  creating build/lib.linux-x86_64-3.7/cryptacular/bcrypt
  copying cryptacular/bcrypt/test_bcrypt.py -> build/lib.linux-x86_64-3.7/cryptacular/bcrypt
  copying cryptacular/bcrypt/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/bcrypt
  running egg_info
  writing cryptacular.egg-info/PKG-INFO
  writing dependency_links to cryptacular.egg-info/dependency_links.txt
  writing namespace_packages to cryptacular.egg-info/namespace_packages.txt
  writing requirements to cryptacular.egg-info/requires.txt
  writing top-level names to cryptacular.egg-info/top_level.txt
  reading manifest file 'cryptacular.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  writing manifest file 'cryptacular.egg-info/SOURCES.txt'
  copying cryptacular/bcrypt/_bcrypt.c -> build/lib.linux-x86_64-3.7/cryptacular/bcrypt
  running build_ext
  building 'cryptacular.bcrypt._bcrypt' extension
  creating build/temp.linux-x86_64-3.7
  creating build/temp.linux-x86_64-3.7/crypt_blowfish-1.2
  creating build/temp.linux-x86_64-3.7/cryptacular
  creating build/temp.linux-x86_64-3.7/cryptacular/bcrypt
  gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c crypt_blowfish-1.2/crypt_blowfish.c -o build/temp.linux-x86_64-3.7/crypt_blowfish-1.2/crypt_blowfish.o
  gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c crypt_blowfish-1.2/crypt_gensalt.c -o build/temp.linux-x86_64-3.7/crypt_blowfish-1.2/crypt_gensalt.o
  gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c crypt_blowfish-1.2/wrapper.c -o build/temp.linux-x86_64-3.7/crypt_blowfish-1.2/wrapper.o
  gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c cryptacular/bcrypt/_bcrypt.c -o build/temp.linux-x86_64-3.7/cryptacular/bcrypt/_bcrypt.o
  In file included from /opt/anaconda3/include/python3.7m/Python.h:44:0,
                   from cryptacular/bcrypt/_bcrypt.c:26:
  crypt_blowfish-1.2/crypt.h:17:23: fatal error: gnu-crypt.h: No such file or directory
   #include <gnu-crypt.h>
                         ^
  compilation terminated.
  error: command 'gcc' failed with exit status 1
  
  ----------------------------------------
  Failed building wheel for cryptacular
  Running setup.py clean for cryptacular
Failed to build cryptacular
Installing collected packages: cryptacular, apex
  Running setup.py install for cryptacular ... error
    Complete output from command /opt/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-g5jfjni4/cryptacular/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-vs8xhc1p/install-record.txt --single-version-externally-managed --compile --user --prefix=:
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.7
    creating build/lib.linux-x86_64-3.7/cryptacular
    copying cryptacular/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular
    creating build/lib.linux-x86_64-3.7/cryptacular/core
    copying cryptacular/core/test_core.py -> build/lib.linux-x86_64-3.7/cryptacular/core
    copying cryptacular/core/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/core
    creating build/lib.linux-x86_64-3.7/cryptacular/pbkdf2
    copying cryptacular/pbkdf2/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/pbkdf2
    copying cryptacular/pbkdf2/test_pbkdf2.py -> build/lib.linux-x86_64-3.7/cryptacular/pbkdf2
    creating build/lib.linux-x86_64-3.7/cryptacular/crypt
    copying cryptacular/crypt/test_crypt.py -> build/lib.linux-x86_64-3.7/cryptacular/crypt
    copying cryptacular/crypt/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/crypt
    creating build/lib.linux-x86_64-3.7/cryptacular/bcrypt
    copying cryptacular/bcrypt/test_bcrypt.py -> build/lib.linux-x86_64-3.7/cryptacular/bcrypt
    copying cryptacular/bcrypt/__init__.py -> build/lib.linux-x86_64-3.7/cryptacular/bcrypt
    running egg_info
    writing cryptacular.egg-info/PKG-INFO
    writing dependency_links to cryptacular.egg-info/dependency_links.txt
    writing namespace_packages to cryptacular.egg-info/namespace_packages.txt
    writing requirements to cryptacular.egg-info/requires.txt
    writing top-level names to cryptacular.egg-info/top_level.txt
    reading manifest file 'cryptacular.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    writing manifest file 'cryptacular.egg-info/SOURCES.txt'
    copying cryptacular/bcrypt/_bcrypt.c -> build/lib.linux-x86_64-3.7/cryptacular/bcrypt
    running build_ext
    building 'cryptacular.bcrypt._bcrypt' extension
    creating build/temp.linux-x86_64-3.7
    creating build/temp.linux-x86_64-3.7/crypt_blowfish-1.2
    creating build/temp.linux-x86_64-3.7/cryptacular
    creating build/temp.linux-x86_64-3.7/cryptacular/bcrypt
    gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c crypt_blowfish-1.2/crypt_blowfish.c -o build/temp.linux-x86_64-3.7/crypt_blowfish-1.2/crypt_blowfish.o
    gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c crypt_blowfish-1.2/crypt_gensalt.c -o build/temp.linux-x86_64-3.7/crypt_blowfish-1.2/crypt_gensalt.o
    gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c crypt_blowfish-1.2/wrapper.c -o build/temp.linux-x86_64-3.7/crypt_blowfish-1.2/wrapper.o
    gcc -pthread -B /opt/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DNO_BF_ASM -Icrypt_blowfish-1.2/ -I/opt/anaconda3/include/python3.7m -c cryptacular/bcrypt/_bcrypt.c -o build/temp.linux-x86_64-3.7/cryptacular/bcrypt/_bcrypt.o
    In file included from /opt/anaconda3/include/python3.7m/Python.h:44:0,
                     from cryptacular/bcrypt/_bcrypt.c:26:
    crypt_blowfish-1.2/crypt.h:17:23: fatal error: gnu-crypt.h: No such file or directory
     #include <gnu-crypt.h>
                           ^
    compilation terminated.
    error: command 'gcc' failed with exit status 1
    
    ----------------------------------------
Command "/opt/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-g5jfjni4/cryptacular/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-vs8xhc1p/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-install-g5jfjni4/cryptacular/

@mschmill
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is PyPi apex a completely different thing?

@ptrblck
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ptrblck commented May 23, 2019

Thanks for the information!
We don't have a pip package yet, and you are apparently trying to install this apex library. Currently you would have to build apex using the install commands from here.

@mschmill
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Thanks for your help. Hopefully the next time someone makes this same mistake this will set them straight!

@6desislava6
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Thank you so much!

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6 participants
@chenyangyu1988 @mcarilli @6desislava6 @ptrblck @mschmill @cskyan