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dft.cpp
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dft.cpp
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/* Copyright (C) 2005-2019 Massachusetts Institute of Technology.
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <string.h>
#include <algorithm>
#include "meep.hpp"
#include "meep_internals.hpp"
using namespace std;
typedef complex<double> cdouble;
namespace meep {
struct dft_chunk_data { // for passing to field::loop_in_chunks as void*
component c;
int vc;
double omega_min, domega;
int Nomega;
complex<double> stored_weight, extra_weight;
double dt_factor;
bool include_dV_and_interp_weights;
bool sqrt_dV_and_interp_weights;
bool empty_dim[5];
dft_chunk *dft_chunks;
};
dft_chunk::dft_chunk(fields_chunk *fc_, ivec is_, ivec ie_, vec s0_, vec s1_, vec e0_, vec e1_,
double dV0_, double dV1_, component c_, bool use_centered_grid,
cdouble phase_factor, ivec shift_, const symmetry &S_, int sn_,
const void *data_) {
dft_chunk_data *data = (dft_chunk_data *)data_;
if (!fc_->f[c_][0]) abort("invalid fields_chunk/component combination in dft_chunk");
fc = fc_;
is = is_;
ie = ie_;
s0 = s0_;
s1 = s1_;
e0 = e0_;
e1 = e1_;
dV0 = dV0_;
dV1 = dV1_;
c = c_;
if (use_centered_grid)
fc->gv.yee2cent_offsets(c, avg1, avg2);
else
avg1 = avg2 = 0;
stored_weight = data->stored_weight;
extra_weight = data->extra_weight;
scale = stored_weight * phase_factor * data->dt_factor;
/* this is for e.g. computing E x H, where we don't want to
multiply by the interpolation weights or the grid_volume twice. */
include_dV_and_interp_weights = data->include_dV_and_interp_weights;
/* an alternative way to avoid multipling by interpolation weights twice:
multiply by square root of the weights */
sqrt_dV_and_interp_weights = data->sqrt_dV_and_interp_weights;
shift = shift_;
S = S_;
sn = sn_;
vc = data->vc;
omega_min = data->omega_min;
domega = data->domega;
Nomega = data->Nomega;
dft_phase = new complex<realnum>[Nomega];
N = 1;
LOOP_OVER_DIRECTIONS(is.dim, d) { N *= (ie.in_direction(d) - is.in_direction(d)) / 2 + 1; }
dft = new complex<realnum>[N * Nomega];
for (size_t i = 0; i < N * Nomega; ++i)
dft[i] = 0.0;
for (int i = 0; i < 5; ++i)
empty_dim[i] = data->empty_dim[i];
next_in_chunk = fc->dft_chunks;
fc->dft_chunks = this;
next_in_dft = data->dft_chunks;
}
dft_chunk::~dft_chunk() {
delete[] dft;
delete[] dft_phase;
// delete from fields_chunk list
dft_chunk *cur = fc->dft_chunks;
if (cur == this)
fc->dft_chunks = next_in_chunk;
else {
while (cur && cur->next_in_chunk && cur->next_in_chunk != this)
cur = cur->next_in_chunk;
if (cur && cur->next_in_chunk == this) cur->next_in_chunk = next_in_chunk;
}
}
void dft_flux::remove() {
while (E) {
dft_chunk *nxt = E->next_in_dft;
delete E;
E = nxt;
}
while (H) {
dft_chunk *nxt = H->next_in_dft;
delete H;
H = nxt;
}
}
static void add_dft_chunkloop(fields_chunk *fc, int ichunk, component cgrid, ivec is, ivec ie,
vec s0, vec s1, vec e0, vec e1, double dV0, double dV1, ivec shift,
complex<double> shift_phase, const symmetry &S, int sn,
void *chunkloop_data) {
dft_chunk_data *data = (dft_chunk_data *)chunkloop_data;
(void)ichunk; // unused
component c = S.transform(data->c, -sn);
if (c >= NUM_FIELD_COMPONENTS || !fc->f[c][0]) return; // this chunk doesn't have component c
data->dft_chunks =
new dft_chunk(fc, is, ie, s0, s1, e0, e1, dV0, dV1, c, cgrid == Centered,
shift_phase * S.phase_shift(c, sn), shift, S, sn, chunkloop_data);
}
dft_chunk *fields::add_dft(component c, const volume &where, double freq_min, double freq_max,
int Nfreq, bool include_dV_and_interp_weights,
complex<double> stored_weight, dft_chunk *chunk_next,
bool sqrt_dV_and_interp_weights, complex<double> extra_weight,
bool use_centered_grid, int vc) {
if (coordinate_mismatch(gv.dim, c)) return NULL;
/* If you call add_dft before adding sources, it will do nothing
since no fields will be found. This is almost certainly not
what the user wants. */
if (!components_allocated)
abort("allocate field components (by adding sources) before adding dft objects");
if (!include_dV_and_interp_weights && sqrt_dV_and_interp_weights)
abort("include_dV_and_interp_weights must be true for sqrt_dV_and_interp_weights=true in "
"add_dft");
dft_chunk_data data;
data.c = c;
data.vc = vc;
if (Nfreq <= 1) freq_min = freq_max = (freq_min + freq_max) * 0.5;
data.omega_min = freq_min * 2 * pi;
data.domega = Nfreq <= 1 ? 0.0 : (freq_max * 2 * pi - data.omega_min) / (Nfreq - 1);
data.Nomega = Nfreq;
data.stored_weight = stored_weight;
data.extra_weight = extra_weight;
data.dt_factor = dt / sqrt(2.0 * pi);
data.include_dV_and_interp_weights = include_dV_and_interp_weights;
data.sqrt_dV_and_interp_weights = sqrt_dV_and_interp_weights;
data.empty_dim[0] = data.empty_dim[1] = data.empty_dim[2] = data.empty_dim[3] =
data.empty_dim[4] = false;
LOOP_OVER_DIRECTIONS(where.dim, d) { data.empty_dim[d] = where.in_direction(d) == 0; }
data.dft_chunks = chunk_next;
loop_in_chunks(add_dft_chunkloop, (void *)&data, where, use_centered_grid ? Centered : c);
return data.dft_chunks;
}
dft_chunk *fields::add_dft(const volume_list *where, double freq_min, double freq_max, int Nfreq,
bool include_dV_and_interp_weights) {
dft_chunk *chunks = 0;
while (where) {
if (is_derived(where->c)) abort("derived_component invalid for dft");
cdouble stored_weight = where->weight;
chunks = add_dft(component(where->c), where->v, freq_min, freq_max, Nfreq,
include_dV_and_interp_weights, stored_weight, chunks);
where = where->next;
}
return chunks;
}
dft_chunk *fields::add_dft_pt(component c, const vec &where, double freq_min, double freq_max,
int Nfreq) {
return add_dft(c, where, freq_min, freq_max, Nfreq, false);
}
void fields::update_dfts() {
am_now_working_on(FourierTransforming);
for (int i = 0; i < num_chunks; i++)
if (chunks[i]->is_mine()) chunks[i]->update_dfts(time(), time() - 0.5 * dt);
finished_working();
}
void fields_chunk::update_dfts(double timeE, double timeH) {
if (doing_solve_cw) return;
for (dft_chunk *cur = dft_chunks; cur; cur = cur->next_in_chunk) {
cur->update_dft(is_magnetic(cur->c) ? timeH : timeE);
}
}
void dft_chunk::update_dft(double time) {
if (!fc->f[c][0]) return;
for (int i = 0; i < Nomega; ++i)
dft_phase[i] = polar(1.0, (omega_min + i * domega) * time) * scale;
int numcmp = fc->f[c][1] ? 2 : 1;
size_t idx_dft = 0;
LOOP_OVER_IVECS(fc->gv, is, ie, idx) {
double w;
if (include_dV_and_interp_weights) {
w = IVEC_LOOP_WEIGHT(s0, s1, e0, e1, dV0 + dV1 * loop_i2);
if (sqrt_dV_and_interp_weights) w = sqrt(w);
} else
w = 1.0;
double f[2]; // real/imag field value at epsilon point
if (avg2)
for (int cmp = 0; cmp < numcmp; ++cmp)
f[cmp] = (w * 0.25) * (fc->f[c][cmp][idx] + fc->f[c][cmp][idx + avg1] +
fc->f[c][cmp][idx + avg2] + fc->f[c][cmp][idx + (avg1 + avg2)]);
else if (avg1)
for (int cmp = 0; cmp < numcmp; ++cmp)
f[cmp] = (w * 0.5) * (fc->f[c][cmp][idx] + fc->f[c][cmp][idx + avg1]);
else
for (int cmp = 0; cmp < numcmp; ++cmp)
f[cmp] = w * fc->f[c][cmp][idx];
if (numcmp == 2) {
complex<realnum> fc(f[0], f[1]);
for (int i = 0; i < Nomega; ++i)
dft[Nomega * idx_dft + i] += dft_phase[i] * fc;
} else {
realnum fr = f[0];
for (int i = 0; i < Nomega; ++i)
dft[Nomega * idx_dft + i] += dft_phase[i] * fr;
}
idx_dft++;
}
}
void dft_chunk::scale_dft(complex<double> scale) {
for (size_t i = 0; i < N * Nomega; ++i)
dft[i] *= scale;
if (next_in_dft) next_in_dft->scale_dft(scale);
}
void dft_chunk::operator-=(const dft_chunk &chunk) {
if (c != chunk.c || N * Nomega != chunk.N * chunk.Nomega)
abort("Mismatched chunks in dft_chunk::operator-=");
for (size_t i = 0; i < N * Nomega; ++i)
dft[i] -= chunk.dft[i];
if (next_in_dft) {
if (!chunk.next_in_dft) abort("Mismatched chunk lists in dft_chunk::operator-=");
*next_in_dft -= *chunk.next_in_dft;
}
}
size_t dft_chunks_Ntotal(dft_chunk *dft_chunks, size_t *my_start) {
size_t n = 0;
for (dft_chunk *cur = dft_chunks; cur; cur = cur->next_in_dft)
n += cur->N * cur->Nomega * 2;
*my_start = partial_sum_to_all(n) - n; // sum(n) for processes before this
return sum_to_all(n);
}
// Note: the file must have been created in parallel mode, typically via fields::open_h5file.
void save_dft_hdf5(dft_chunk *dft_chunks, const char *name, h5file *file, const char *dprefix) {
size_t istart;
size_t n = dft_chunks_Ntotal(dft_chunks, &istart);
char dataname[1024];
snprintf(dataname, 1024,
"%s%s"
"%s_dft",
dprefix ? dprefix : "", dprefix && dprefix[0] ? "_" : "", name);
file->create_data(dataname, 1, &n);
for (dft_chunk *cur = dft_chunks; cur; cur = cur->next_in_dft) {
size_t Nchunk = cur->N * cur->Nomega * 2;
file->write_chunk(1, &istart, &Nchunk, (realnum *)cur->dft);
istart += Nchunk;
}
file->done_writing_chunks();
}
void save_dft_hdf5(dft_chunk *dft_chunks, component c, h5file *file, const char *dprefix) {
save_dft_hdf5(dft_chunks, component_name(c), file, dprefix);
}
void load_dft_hdf5(dft_chunk *dft_chunks, const char *name, h5file *file, const char *dprefix) {
size_t istart;
size_t n = dft_chunks_Ntotal(dft_chunks, &istart);
char dataname[1024];
snprintf(dataname, 1024,
"%s%s"
"%s_dft",
dprefix ? dprefix : "", dprefix && dprefix[0] ? "_" : "", name);
int file_rank;
size_t file_dims;
file->read_size(dataname, &file_rank, &file_dims, 1);
if (file_rank != 1 || file_dims != n)
abort("incorrect dataset size (%zd vs. %zd) in load_dft_hdf5 %s:%s", file_dims, n,
file->file_name(), dataname);
for (dft_chunk *cur = dft_chunks; cur; cur = cur->next_in_dft) {
size_t Nchunk = cur->N * cur->Nomega * 2;
file->read_chunk(1, &istart, &Nchunk, (realnum *)cur->dft);
istart += Nchunk;
}
}
void load_dft_hdf5(dft_chunk *dft_chunks, component c, h5file *file, const char *dprefix) {
load_dft_hdf5(dft_chunks, component_name(c), file, dprefix);
}
dft_flux::dft_flux(const component cE_, const component cH_, dft_chunk *E_, dft_chunk *H_,
double fmin, double fmax, int Nf, const volume &where_,
direction normal_direction_, bool use_symmetry_)
: Nfreq(Nf), E(E_), H(H_), cE(cE_), cH(cH_), where(where_), normal_direction(normal_direction_),
use_symmetry(use_symmetry_) {
if (Nf <= 1) fmin = fmax = (fmin + fmax) * 0.5;
freq_min = fmin;
dfreq = Nf <= 1 ? 0.0 : (fmax - fmin) / (Nf - 1);
}
dft_flux::dft_flux(const dft_flux &f) : where(f.where) {
freq_min = f.freq_min;
Nfreq = f.Nfreq;
dfreq = f.dfreq;
E = f.E;
H = f.H;
cE = f.cE;
cH = f.cH;
normal_direction = f.normal_direction;
use_symmetry = f.use_symmetry;
}
double *dft_flux::flux() {
double *F = new double[Nfreq];
for (int i = 0; i < Nfreq; ++i)
F[i] = 0;
for (dft_chunk *curE = E, *curH = H; curE && curH;
curE = curE->next_in_dft, curH = curH->next_in_dft)
for (size_t k = 0; k < curE->N; ++k)
for (int i = 0; i < Nfreq; ++i)
F[i] += real(curE->dft[k * Nfreq + i] * conj(curH->dft[k * Nfreq + i]));
double *Fsum = new double[Nfreq];
sum_to_all(F, Fsum, Nfreq);
delete[] F;
return Fsum;
}
void dft_flux::save_hdf5(h5file *file, const char *dprefix) {
save_dft_hdf5(E, cE, file, dprefix);
file->prevent_deadlock(); // hackery
save_dft_hdf5(H, cH, file, dprefix);
}
void dft_flux::load_hdf5(h5file *file, const char *dprefix) {
load_dft_hdf5(E, cE, file, dprefix);
file->prevent_deadlock(); // hackery
load_dft_hdf5(H, cH, file, dprefix);
}
void dft_flux::save_hdf5(fields &f, const char *fname, const char *dprefix, const char *prefix) {
h5file *ff = f.open_h5file(fname, h5file::WRITE, prefix);
save_hdf5(ff, dprefix);
delete ff;
}
void dft_flux::load_hdf5(fields &f, const char *fname, const char *dprefix, const char *prefix) {
h5file *ff = f.open_h5file(fname, h5file::READONLY, prefix);
load_hdf5(ff, dprefix);
delete ff;
}
void dft_flux::scale_dfts(complex<double> scale) {
if (E) E->scale_dft(scale);
if (H) H->scale_dft(scale);
}
dft_flux fields::add_dft_flux(const volume_list *where_, double freq_min, double freq_max,
int Nfreq, bool use_symmetry) {
if (!where_) // handle empty list of volumes
return dft_flux(Ex, Hy, NULL, NULL, freq_min, freq_max, Nfreq, v, NO_DIRECTION, use_symmetry);
dft_chunk *E = 0, *H = 0;
component cE[2] = {Ex, Ey}, cH[2] = {Hy, Hx};
// the dft_flux object needs to store the (unreduced) volume for
// mode-coefficient computation in mpb.cpp, but this only works
// when the volume_list consists of a single volume, so it suffices
// to store the first volume in the list.
volume firstvol(where_->v);
volume_list *where = use_symmetry ? S.reduce(where_) : new volume_list(where_);
volume_list *where_save = where;
while (where) {
derived_component c = derived_component(where->c);
if (coordinate_mismatch(gv.dim, component_direction(c)))
abort("coordinate-type mismatch in add_dft_flux");
switch (c) {
case Sx: cE[0] = Ey, cE[1] = Ez, cH[0] = Hz, cH[1] = Hy; break;
case Sy: cE[0] = Ez, cE[1] = Ex, cH[0] = Hx, cH[1] = Hz; break;
case Sr: cE[0] = Ep, cE[1] = Ez, cH[0] = Hz, cH[1] = Hp; break;
case Sp: cE[0] = Ez, cE[1] = Er, cH[0] = Hr, cH[1] = Hz; break;
case Sz:
if (gv.dim == Dcyl)
cE[0] = Er, cE[1] = Ep, cH[0] = Hp, cH[1] = Hr;
else
cE[0] = Ex, cE[1] = Ey, cH[0] = Hy, cH[1] = Hx;
break;
default: abort("invalid flux component!");
}
for (int i = 0; i < 2; ++i) {
E = add_dft(cE[i], where->v, freq_min, freq_max, Nfreq, true,
where->weight * double(1 - 2 * i), E);
H = add_dft(cH[i], where->v, freq_min, freq_max, Nfreq, false, 1.0, H);
}
where = where->next;
}
delete where_save;
// if the volume list has only one entry, store its component's direction.
// if the volume list has > 1 entry, store NO_DIRECTION.
direction flux_dir = (where_->next ? NO_DIRECTION : component_direction(where_->c));
return dft_flux(cE[0], cH[0], E, H, freq_min, freq_max, Nfreq, firstvol, flux_dir, use_symmetry);
}
dft_energy::dft_energy(dft_chunk *E_, dft_chunk *H_, dft_chunk *D_, dft_chunk *B_, double fmin,
double fmax, int Nf, const volume &where_)
: Nfreq(Nf), E(E_), H(H_), D(D_), B(B_), where(where_) {
if (Nf <= 1) fmin = fmax = (fmin + fmax) * 0.5;
freq_min = fmin;
dfreq = Nf <= 1 ? 0.0 : (fmax - fmin) / (Nf - 1);
}
dft_energy::dft_energy(const dft_energy &f) : where(f.where) {
freq_min = f.freq_min;
Nfreq = f.Nfreq;
dfreq = f.dfreq;
E = f.E;
H = f.H;
D = f.D;
B = f.B;
}
double *dft_energy::electric() {
double *F = new double[Nfreq];
for (int i = 0; i < Nfreq; ++i)
F[i] = 0;
for (dft_chunk *curE = E, *curD = D; curE && curD;
curE = curE->next_in_dft, curD = curD->next_in_dft)
for (size_t k = 0; k < curE->N; ++k)
for (int i = 0; i < Nfreq; ++i)
F[i] += 0.5 * real(conj(curE->dft[k * Nfreq + i]) * curD->dft[k * Nfreq + i]);
double *Fsum = new double[Nfreq];
sum_to_all(F, Fsum, Nfreq);
delete[] F;
return Fsum;
}
double *dft_energy::magnetic() {
double *F = new double[Nfreq];
for (int i = 0; i < Nfreq; ++i)
F[i] = 0;
for (dft_chunk *curH = H, *curB = B; curH && curB;
curH = curH->next_in_dft, curB = curB->next_in_dft)
for (size_t k = 0; k < curH->N; ++k)
for (int i = 0; i < Nfreq; ++i)
F[i] += 0.5 * real(conj(curH->dft[k * Nfreq + i]) * curB->dft[k * Nfreq + i]);
double *Fsum = new double[Nfreq];
sum_to_all(F, Fsum, Nfreq);
delete[] F;
return Fsum;
}
double *dft_energy::total() {
double *Fe = electric();
double *Fm = magnetic();
double *F = new double[Nfreq];
for (int i = 0; i < Nfreq; ++i)
F[i] = Fe[i] + Fm[i];
delete[] Fe;
delete[] Fm;
return F;
}
dft_energy fields::add_dft_energy(const volume_list *where_, double freq_min, double freq_max,
int Nfreq) {
if (!where_) // handle empty list of volumes
return dft_energy(NULL, NULL, NULL, NULL, freq_min, freq_max, Nfreq, v);
dft_chunk *E = 0, *D = 0, *H = 0, *B = 0;
volume firstvol(where_->v);
volume_list *where = new volume_list(where_);
volume_list *where_save = where;
while (where) {
LOOP_OVER_FIELD_DIRECTIONS(gv.dim, d) {
E = add_dft(direction_component(Ex, d), where->v, freq_min, freq_max, Nfreq, true, 1.0, E);
D = add_dft(direction_component(Dx, d), where->v, freq_min, freq_max, Nfreq, false, 1.0, D);
H = add_dft(direction_component(Hx, d), where->v, freq_min, freq_max, Nfreq, true, 1.0, H);
B = add_dft(direction_component(Bx, d), where->v, freq_min, freq_max, Nfreq, false, 1.0, B);
}
where = where->next;
}
delete where_save;
return dft_energy(E, H, D, B, freq_min, freq_max, Nfreq, firstvol);
}
void dft_energy::save_hdf5(h5file *file, const char *dprefix) {
save_dft_hdf5(E, "E", file, dprefix);
file->prevent_deadlock(); // hackery
save_dft_hdf5(D, "D", file, dprefix);
file->prevent_deadlock(); // hackery
save_dft_hdf5(H, "H", file, dprefix);
file->prevent_deadlock(); // hackery
save_dft_hdf5(B, "B", file, dprefix);
}
void dft_energy::load_hdf5(h5file *file, const char *dprefix) {
load_dft_hdf5(E, "E", file, dprefix);
file->prevent_deadlock(); // hackery
load_dft_hdf5(D, "D", file, dprefix);
file->prevent_deadlock(); // hackery
load_dft_hdf5(H, "H", file, dprefix);
file->prevent_deadlock(); // hackery
load_dft_hdf5(B, "B", file, dprefix);
}
void dft_energy::save_hdf5(fields &f, const char *fname, const char *dprefix, const char *prefix) {
h5file *ff = f.open_h5file(fname, h5file::WRITE, prefix);
save_hdf5(ff, dprefix);
delete ff;
}
void dft_energy::load_hdf5(fields &f, const char *fname, const char *dprefix, const char *prefix) {
h5file *ff = f.open_h5file(fname, h5file::READONLY, prefix);
load_hdf5(ff, dprefix);
delete ff;
}
void dft_energy::scale_dfts(complex<double> scale) {
if (E) E->scale_dft(scale);
if (D) D->scale_dft(scale);
if (H) H->scale_dft(scale);
if (B) B->scale_dft(scale);
}
void dft_energy::remove() {
while (E) {
dft_chunk *nxt = E->next_in_dft;
delete E;
E = nxt;
}
while (D) {
dft_chunk *nxt = D->next_in_dft;
delete D;
D = nxt;
}
while (H) {
dft_chunk *nxt = H->next_in_dft;
delete H;
H = nxt;
}
while (B) {
dft_chunk *nxt = B->next_in_dft;
delete B;
B = nxt;
}
}
direction fields::normal_direction(const volume &where) const {
direction d = where.normal_direction();
if (d == NO_DIRECTION) {
/* hack so that we still infer the normal direction correctly for
volumes with empty dimensions */
volume where_pad(where);
LOOP_OVER_DIRECTIONS(where.dim, d1) {
if (nosize_direction(d1) && where.in_direction(d1) == 0.0)
where_pad.set_direction_max(d1, where.in_direction_min(d1) + 0.1);
}
d = where_pad.normal_direction();
if (d == NO_DIRECTION) abort("Could not determine normal direction for given grid_volume.");
}
return d;
}
dft_flux fields::add_dft_flux(direction d, const volume &where, double freq_min, double freq_max,
int Nfreq, bool use_symmetry) {
if (d == NO_DIRECTION) d = normal_direction(where);
volume_list vl(where, direction_component(Sx, d));
dft_flux flux = add_dft_flux(&vl, freq_min, freq_max, Nfreq, use_symmetry);
flux.normal_direction = d;
return flux;
}
dft_flux fields::add_mode_monitor(direction d, const volume &where, double freq_min,
double freq_max, int Nfreq) {
return add_dft_flux(d, where, freq_min, freq_max, Nfreq, /*use_symmetry=*/false);
}
dft_flux fields::add_dft_flux_box(const volume &where, double freq_min, double freq_max,
int Nfreq) {
volume_list *faces = 0;
LOOP_OVER_DIRECTIONS(where.dim, d) {
if (where.in_direction(d) > 0) {
volume face(where);
derived_component c = direction_component(Sx, d);
face.set_direction_min(d, where.in_direction_max(d));
faces = new volume_list(face, c, +1, faces);
face.set_direction_min(d, where.in_direction_min(d));
face.set_direction_max(d, where.in_direction_min(d));
faces = new volume_list(face, c, -1, faces);
}
}
dft_flux flux = add_dft_flux(faces, freq_min, freq_max, Nfreq);
delete faces;
return flux;
}
dft_flux fields::add_dft_flux_plane(const volume &where, double freq_min, double freq_max,
int Nfreq) {
return add_dft_flux(NO_DIRECTION, where, freq_min, freq_max, Nfreq);
}
dft_fields::dft_fields(dft_chunk *chunks_, double freq_min_, double freq_max_, int Nfreq_,
const volume &where_)
: where(where_) {
chunks = chunks_;
freq_min = freq_min_;
dfreq = Nfreq_ <= 1 ? 0.0 : (freq_max_ - freq_min_) / (Nfreq_ - 1);
Nfreq = Nfreq_;
}
void dft_fields::scale_dfts(cdouble scale) { chunks->scale_dft(scale); }
void dft_fields::remove() {
while (chunks) {
dft_chunk *nxt = chunks->next_in_dft;
delete chunks;
chunks = nxt;
}
}
dft_fields fields::add_dft_fields(component *components, int num_components, const volume where,
double freq_min, double freq_max, int Nfreq) {
bool include_dV_and_interp_weights = false;
cdouble stored_weight = 1.0;
dft_chunk *chunks = 0;
for (int nc = 0; nc < num_components; nc++)
chunks = add_dft(components[nc], where, freq_min, freq_max, Nfreq,
include_dV_and_interp_weights, stored_weight, chunks);
return dft_fields(chunks, freq_min, freq_max, Nfreq, where);
}
/***************************************************************/
/* chunk-level processing for fields::process_dft_component. */
/***************************************************************/
cdouble dft_chunk::process_dft_component(int rank, direction *ds, ivec min_corner, ivec max_corner,
int num_freq, h5file *file, double *buffer, int reim,
cdouble *field_array, void *mode1_data, void *mode2_data,
int ic_conjugate, bool retain_interp_weights,
fields *parent) {
/*****************************************************************/
/* compute the size of the chunk we own and its strides etc. */
/*****************************************************************/
size_t start[3] = {0, 0, 0};
size_t file_count[3] = {1, 1, 1}, array_count[3] = {1, 1, 1};
int file_offset[3] = {0, 0, 0};
int file_stride[3] = {1, 1, 1};
ivec isS = S.transform(is, sn) + shift;
ivec ieS = S.transform(ie, sn) + shift;
ivec permute(zero_ivec(fc->gv.dim));
for (int i = 0; i < 3; ++i)
permute.set_direction(fc->gv.yucky_direction(i), i);
permute = S.transform_unshifted(permute, sn);
LOOP_OVER_DIRECTIONS(permute.dim, d) { permute.set_direction(d, abs(permute.in_direction(d))); }
for (int i = 0; i < rank; ++i) {
direction d = ds[i];
int isd = isS.in_direction(d), ied = ieS.in_direction(d);
start[i] = (min(isd, ied) - min_corner.in_direction(d)) / 2;
file_count[i] = abs(ied - isd) / 2 + 1;
if (ied < isd) file_offset[permute.in_direction(d)] = file_count[i] - 1;
array_count[i] = (max_corner.in_direction(d) - min_corner.in_direction(d)) / 2 + 1;
}
for (int i = 0; i < rank; ++i) {
direction d = ds[i];
int j = permute.in_direction(d);
for (int k = i + 1; k < rank; ++k)
file_stride[j] *= file_count[k];
file_offset[j] *= file_stride[j];
if (file_offset[j]) file_stride[j] *= -1;
}
/*****************************************************************/
/* For collapsing empty dimensions, we want to retain interpolation
weights for empty dimensions, but not interpolation weights for
integration of edge pixels (for retain_interp_weights == true).
All of the weights are stored in (s0, s1, e0, e1), so we make
a copy of these with the weights for non-empty dimensions set to 1. */
vec s0i(s0), s1i(s1), e0i(e0), e1i(e1);
LOOP_OVER_DIRECTIONS(fc->gv.dim, d) {
if (!empty_dim[d]) {
s0i.set_direction(d, 1.0);
s1i.set_direction(d, 1.0);
e0i.set_direction(d, 1.0);
e1i.set_direction(d, 1.0);
}
}
/***************************************************************/
/* loop over all grid points in our piece of the volume */
/***************************************************************/
vec rshift(shift * (0.5 * fc->gv.inva));
int chunk_idx = 0;
cdouble integral = 0.0;
component c_conjugate = (component)(ic_conjugate >= 0 ? ic_conjugate : -ic_conjugate);
LOOP_OVER_IVECS(fc->gv, is, ie, idx) {
IVEC_LOOP_LOC(fc->gv, loc);
loc = S.transform(loc, sn) + rshift;
double w = IVEC_LOOP_WEIGHT(s0, s1, e0, e1, dV0 + dV1 * loop_i2);
double interp_w = retain_interp_weights ? IVEC_LOOP_WEIGHT(s0i, s1i, e0i, e1i, 1.0) : 1.0;
cdouble dft_val = (c_conjugate == NO_COMPONENT
? w
: c_conjugate == Dielectric
? parent->get_eps(loc)
: c_conjugate == Permeability
? parent->get_mu(loc)
: dft[Nomega * (chunk_idx++) + num_freq] / stored_weight);
if (include_dV_and_interp_weights) dft_val /= (sqrt_dV_and_interp_weights ? sqrt(w) : w);
cdouble mode1val = 0.0, mode2val = 0.0;
if (mode1_data) mode1val = eigenmode_amplitude(mode1_data, loc, S.transform(c_conjugate, sn));
if (mode2_data) mode2val = eigenmode_amplitude(mode2_data, loc, S.transform(c, sn));
if (file) {
int idx2 = ((((file_offset[0] + file_offset[1] + file_offset[2]) + loop_i1 * file_stride[0]) +
loop_i2 * file_stride[1]) +
loop_i3 * file_stride[2]);
dft_val *= interp_w;
cdouble val = (mode1_data ? mode1val : dft_val);
buffer[idx2] = reim ? imag(val) : real(val);
} else if (field_array) {
IVEC_LOOP_ILOC(fc->gv, iloc); // iloc <-- indices of parent point in Yee grid
iloc = S.transform(iloc, sn) + shift; // iloc <-- indices of child point in Yee grid
iloc -= min_corner; // iloc <-- 2*(indices of point in DFT array)
// the index of point n1 or (n1,n2) or (n1,n2,n3) in a 1D, 2D, or 3D array is
// (for a 1D array) n1
// (for a 2D array) n2 + n1*N2
// (for a 3D array) n3 + n2*N3 + n1*N2*N3
// where NI = number of points in Ith direction.
int idx2 = 0;
for (int i = rank - 1, stride = 1; i >= 0; stride *= array_count[i--])
idx2 += stride * (iloc.in_direction(ds[i]) / 2);
field_array[idx2] = interp_w * dft_val;
} else {
mode1val = conj(mode1val); // conjugated inner product
if (mode2_data)
integral += w * mode1val * mode2val;
else
integral += w * mode1val * dft_val;
}
} // LOOP_OVER_IVECS(fc->gv, is, ie, idx)
if (file) file->write_chunk(rank, start, file_count, buffer);
return integral;
}
/***************************************************************/
/* low-level [actually intermediate-level, since it calls */
/* dft_chunk::process_dft_component(), which is the true */
/* low-level function] workhorse routine that forms the common */
/* backend for several operations involving DFT fields. */
/* */
/* looks through the given collection of dft_chunks and */
/* processes only those chunks that store component c, using */
/* only data for frequency #num_freq. */
/* */
/* the meaning of 'processes' depends on the arguments: */
/* */
/* 1. if HDF5FileName is non-null: write to the given HDF5 */
/* file a new dataset describing either */
/* (A) DFT field component c (if mode_data1 is null), or */
/* (B) mode field component c for the eigenmode described */
/* by mode_data1 (if it is non-null) */
/* */
/* 2. if HDF5FileName is null but pfield_array is non-null: */
/* set *pfield_array equal to a newly allocated buffer */
/* populated on return with values of DFT field component */
/* c, equivalent to writing the data to HDF5 and reading */
/* it back into field_array. */
/* */
/* 3. if both HDF5FileName and field_array are null: compute */
/* and return an overlap integral between */
/* (A) the DFT fields and the fields of the eigenmode */
/* described by mode_data1 (if mode_data2 is null) */
/* (B) the eigenmode fields described by mode_data1 */
/* and the eigenmode fields described by mode_data2 */
/* (if mode_data2 is non-null). */
/* more specifically, the integral computed is */
/* < mode1_{c_conjugate} | dft_{c} > */
/* in case (A) and */
/* < mode1_{c_conjugate} | mode2_{c} > */
/* in case (B). */
/* */
/* if where is non-null, only field components inside *where */
/* are processed. */
/***************************************************************/
cdouble fields::process_dft_component(dft_chunk **chunklists, int num_chunklists, int num_freq,
component c, const char *HDF5FileName, cdouble **pfield_array,
int *array_rank, size_t *array_dims, direction *array_dirs,
void *mode1_data, void *mode2_data, component c_conjugate,
bool *first_component, bool retain_interp_weights) {
/***************************************************************/
/***************************************************************/
/***************************************************************/
int ic_conjugate = (int)c_conjugate;
if (component_index(c) == -1) {
ic_conjugate = -((int)c);
num_chunklists = 1;
c = chunklists[0]->c;
}
/***************************************************************/
/* get statistics on the volume slice **************************/
/***************************************************************/
volume *where = &v; // use full volume of fields
size_t bufsz = 0;
ivec min_corner = gv.round_vec(where->get_max_corner()) + one_ivec(gv.dim);
ivec max_corner = gv.round_vec(where->get_min_corner()) - one_ivec(gv.dim);
for (int ncl = 0; ncl < num_chunklists; ncl++)
for (dft_chunk *chunk = chunklists[ncl]; chunk; chunk = chunk->next_in_dft) {
if (chunk->c != c) continue;
ivec isS = chunk->S.transform(chunk->is, chunk->sn) + chunk->shift;
ivec ieS = chunk->S.transform(chunk->ie, chunk->sn) + chunk->shift;
min_corner = min(min_corner, min(isS, ieS));
max_corner = max(max_corner, max(isS, ieS));
size_t this_bufsz = 1;
LOOP_OVER_DIRECTIONS(chunk->fc->gv.dim, d) {
this_bufsz *= (chunk->ie.in_direction(d) - chunk->is.in_direction(d)) / 2 + 1;
}
bufsz = max(bufsz, this_bufsz);
}
max_corner = max_to_all(max_corner);
min_corner = -max_to_all(-min_corner); // i.e., min_to_all
/***************************************************************/
/***************************************************************/
/***************************************************************/
int rank = 0;
size_t dims[3];
direction ds[3];
size_t array_size = 1;
LOOP_OVER_DIRECTIONS(gv.dim, d) {
if (rank >= 3) abort("too many dimensions in process_dft_component");
size_t n = std::max(0, (max_corner.in_direction(d) - min_corner.in_direction(d)) / 2 + 1);
if (n > 1) {
ds[rank] = d;
dims[rank++] = n;
array_size *= n;
}
}
if (array_rank) {
*array_rank = rank;
for (int d = 0; d < rank; d++) {
if (array_dims) array_dims[d] = dims[d];
if (array_dirs) array_dirs[d] = ds[d];
}
}
if (rank == 0) {
if (pfield_array) *pfield_array = 0;
return 0.0; // no chunks with the specified component on this processor
}
/***************************************************************/
/* buffer for process-local contributions to HDF5 output files,*/
/* like h5_output_data::buf in h5fields.cpp */
/***************************************************************/
realnum *buffer = 0;
cdouble *field_array = 0;
int reim_max = 0;
if (HDF5FileName) {
buffer = new realnum[bufsz];
reim_max = 1;
} else if (pfield_array)
*pfield_array = field_array = (array_size ? new cdouble[array_size] : 0);
bool append_data = false;
bool single_precision = false;
cdouble overlap = 0.0;
for (int reim = 0; reim <= reim_max; reim++) {
h5file *file = 0;
if (HDF5FileName) {
file = open_h5file(HDF5FileName, (*first_component) ? h5file::WRITE : h5file::READWRITE);
*first_component = false;
char dataname[100];
snprintf(dataname, 100, "%s_%i.%c", component_name(c), num_freq, reim ? 'i' : 'r');
file->create_or_extend_data(dataname, rank, dims, append_data, single_precision);
}
for (int ncl = 0; ncl < num_chunklists; ncl++)
for (dft_chunk *chunk = chunklists[ncl]; chunk; chunk = chunk->next_in_dft)
if (chunk->c == c)
overlap += chunk->process_dft_component(rank, ds, min_corner, max_corner, num_freq, file,
buffer, reim, field_array, mode1_data, mode2_data,
ic_conjugate, retain_interp_weights, this);
if (HDF5FileName) {
file->done_writing_chunks();
file->prevent_deadlock(); // hackery
delete file;
} else if (field_array) {
/***************************************************************/
/* repeatedly call sum_to_all to consolidate full field array */
/* on all cores */
/***************************************************************/
#define BUFSIZE 1 << 16 // use 64k buffer
cdouble *buf = new cdouble[BUFSIZE];
ptrdiff_t offset = 0;
size_t remaining = array_size;
while (remaining != 0) {
size_t size = (remaining > BUFSIZE ? BUFSIZE : remaining);
sum_to_all(field_array + offset, buf, size);
memcpy(field_array + offset, buf, size * sizeof(cdouble));
remaining -= size;
offset += size;
}
delete[] buf;
}
} // for(int reim=0; reim<=reim_max; reim++)
if (HDF5FileName)
delete[] buffer;
else
overlap = sum_to_all(overlap);
return overlap;
}
/***************************************************************/
/* routines for fetching arrays of dft fields */
/***************************************************************/
cdouble *collapse_array(cdouble *array, int *rank, size_t dims[3], direction dirs[3], volume where);
cdouble *fields::get_dft_array(dft_flux flux, component c, int num_freq, int *rank,
size_t dims[3]) {
dft_chunk *chunklists[2];
chunklists[0] = flux.E;
chunklists[1] = flux.H;
cdouble *array;
direction dirs[3];
process_dft_component(chunklists, 2, num_freq, c, 0, &array, rank, dims, dirs);
return collapse_array(array, rank, dims, dirs, flux.where);
}
cdouble *fields::get_dft_array(dft_force force, component c, int num_freq, int *rank,
size_t dims[3]) {
dft_chunk *chunklists[3];
chunklists[0] = force.offdiag1;
chunklists[1] = force.offdiag2;