Skip to content
@Nanostring-Biostats

NanoString Technologies, Inc.

Pinned Loading

  1. CosMx-Analysis-Scratch-Space CosMx-Analysis-Scratch-Space Public

    This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…

    HTML 15 3

  2. GeomxTools GeomxTools Public

    Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

    R 33 14

  3. InSituType InSituType Public

    An R package for performing cell typing in SMI and other single cell data

    HTML 21 10

  4. SpatialOmicsOverlay SpatialOmicsOverlay Public

    Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).

    R 15 4

  5. InSituCor InSituCor Public

    InSituCor An R package for discovering modules of spatially correlated genes in spatial transcriptomics data.

    HTML

  6. FastReseg FastReseg Public

    FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.

    HTML 1

Repositories

Showing 10 of 38 repositories
  • CosMxDACustomModules Public

    Repository for custom module scripts for SMIDA

    Nanostring-Biostats/CosMxDACustomModules’s past year of commit activity
    HTML 10 0 2 0 Updated Jul 19, 2024
  • CosMx-Analysis-Scratch-Space Public

    This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.

    Nanostring-Biostats/CosMx-Analysis-Scratch-Space’s past year of commit activity
    HTML 15 3 16 (1 issue needs help) 1 Updated Jul 18, 2024
  • DSPPlugins Public

    Repository for DSP Plugins

    Nanostring-Biostats/DSPPlugins’s past year of commit activity
    HTML 9 4 9 1 Updated Jun 26, 2024
  • GeomxTools Public

    Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

    Nanostring-Biostats/GeomxTools’s past year of commit activity
    R 33 MIT 14 30 1 Updated Jun 14, 2024
  • FastReseg Public

    FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.

    Nanostring-Biostats/FastReseg’s past year of commit activity
    HTML 1 0 5 1 Updated Jun 6, 2024
  • CellProfileLibrary Public
    Nanostring-Biostats/CellProfileLibrary’s past year of commit activity
    23 12 8 1 Updated May 23, 2024
  • InSituType Public

    An R package for performing cell typing in SMI and other single cell data

    Nanostring-Biostats/InSituType’s past year of commit activity
    HTML 21 10 14 1 Updated May 14, 2024
  • SpatialOmicsOverlay Public

    Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).

    Nanostring-Biostats/SpatialOmicsOverlay’s past year of commit activity
    R 15 MIT 4 17 0 Updated Apr 30, 2024
  • NanoStringNCTools Public

    Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.

    Nanostring-Biostats/NanoStringNCTools’s past year of commit activity
    R 7 MIT 6 8 0 Updated Apr 16, 2024
  • GeoMxWorkflows Public

    Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages

    Nanostring-Biostats/GeoMxWorkflows’s past year of commit activity
    4 MIT 9 8 2 Updated Apr 12, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…