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Repository for custom scripts used in the Macroevolution of Milkweed Longhorn Beetles Project analysis.

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Name		Name	Last commit message	Last commit date
Latest commit History 42 Commits
1.QualityControl		1.QualityControl
2.GenomeAssembly		2.GenomeAssembly
3.UCEprobes		3.UCEprobes
4.PartitionFinding		4.PartitionFinding
5.Phylogenomics		5.Phylogenomics
6.DivergenceDating		6.DivergenceDating
7.Global-AncestralRangeEstimation		7.Global-AncestralRangeEstimation
8.American-AncestralRangeEstimation		8.American-AncestralRangeEstimation
9.Suppl-In-silico-test-Coleoptera-probes		9.Suppl-In-silico-test-Coleoptera-probes
README.md		README.md

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2023_MacroevolTetraopes

Custom scripts were employed for the analysis of the Macroevolution of Milkweed Longhorn Beetles Project.

For any inquiries, please contact Nayeli Gutierrez (ngutierrez@amnh.org).

Index

Quality control
Genome assembly
Ultraconserved Element (UCE) capture with custom probe set
UCE matrix generation and partitioning
Phylogenomics
Divergence time estimation
Ancestral range estimation (global scale and American scale)

Supplementary

In silico test of the UCE Coleoptera probes on the Tetraopes genomes

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Repository for custom scripts used in the Macroevolution of Milkweed Longhorn Beetles Project analysis.

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