utils2p

Overview

This module provides utility functions necessary for loading and processing 2-photon imaging data acquired with ThorLabs microscopes. It includes function to read files generated by ThorImage and ThorSync.

Documentation

The full documentation is hosted on github pages.

Installation

Note that you will need an installation of numpy to install this package. You can install numpy with the following command:

pip install numpy

The package can be installed using pip with:

pip install utils2p

If you need the latest version or you want to make changes to the code, you should install utils2p from source by following the steps below.

To do so first create a copy of the source code on your machine by cloning the repository:

git clone https://github.com/NeLy-EPFL/utils2p.git

Then install it using the following command:

pip install -e utils2p

Dependencies

• python >3.6
• pip
• numpy
• h5py
• scipy