Fixed up the settings file to assign the new core top elements. and t…

…o make sure the values reflect a clean run.

settings.yaml

@@ -1,13 +1,13 @@
 #  Should the program remove any existing files in the Cores directory and start again?
-clean_run: false
+clean_run: true
 bacon: true
 bchron: true
 
 #  What version of the run is this?  This will create a new parameters file if none exists.
 version: 1
 
 # If a parameters file exists with the current version number should that file overwritten?
-reset_parameters: false
+reset_parameters: true
 
 # Where will the Bacon core files go?
 core_path: 'Cores'