Fixing for CRAN

.Rbuildignore

@@ -25,4 +25,6 @@ paper.*
 ^CRAN-SUBMISSION$
 codemeta.json
 
-^codemeta\.json$
+^codemeta\.json$
+
+CITATION.cff

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: neotoma2
 Title: Working with the Neotoma Paleoecology Database
-Date: 2023-08-16
+Date: 2024-02-05
 Version: 1.0.3
 Authors@R:
     c(person(given = "Dominguez Vidana",

R/collunits-methods.R

@@ -128,6 +128,7 @@ setMethod(f = "show",
 #' @title Get or remove sites by numeric index
 #' @param x The collunits object
 #' @param i The numeric index
+#' @description Retrieve sites by numeric index
 #' @return null used for side effects. Printing a data.frame
 setMethod(f = "[",
           signature = signature(x = "collunits", i = "numeric"),

README.md

@@ -3,7 +3,7 @@
 [![NSF-1948926](https://img.shields.io/badge/NSF-1948926-blue.svg)](https://www.nsf.gov/awardsearch/showAward?AWD_ID=1948926)
 [![Codecov test coverage](https://codecov.io/gh/NeotomaDB/neotoma2/branch/production/graph/badge.svg)](https://app.codecov.io/gh/NeotomaDB/neotoma2?branch=production)
 [![DOI](https://zenodo.org/badge/265675258.svg)](https://zenodo.org/badge/latestdoi/265675258) 
-[![status](https://joss.theoj.org/papers/80636d1e6d32175f13edb7e7ed14089a/status.svg)](https://joss.theoj.org/papers/80636d1e6d32175f13edb7e7ed14089a)
+[![status](https://joss.theoj.org/papers/80636d1e6d32175f13edb7e7ed14089a/status.svg)](https://joss.theoj.org/papers/10.21105/joss.05561)
 <!-- badges: end -->
 
 # `neotoma2` R Package

cran-comments.md

@@ -174,4 +174,12 @@ I hope this is correct now, otherwise, please give me some more references/examp
 
 ## Remarks for Upgrade 1.0.3
 
-Added JOSS Article PDF and fixed small errors in the API calls.
+Fixed errors in the API calls.
+
+Fixed filter function for collection units and datasets.
+
+Updated plotLeaflet to not add provider tiles.
+
+Removed mapview to avoid `sp` conflicts.
+
+Updated README to reflect milestones with JOSS.