comet.md

Peptide Spectrum Matching using the Comet database search engine.

Version

Comet release 2017.01 rev. 4

Usage

philosopher comet [flags] [files]

Flags

--print

Print the default parameter file to the local directory.

--param

Points the location of the parameter file for the analysis.

Example

Execute Comet using the parameter file param.txt, and using 2 converted raw files sample1 and sample2. Comet will analyze them one at a time using the specified parameters.

philosopher comet --param param.txt sample1.mzml sample2.mzml