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@Nesvilab

Nesvilab

Alexey Nesvizhskii's proteome bioinformatics group.

Pinned

  1. A complete toolkit for shotgun proteomics data analysis

    Go 65 11

  2. FragPipe Public

    A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

    Java 62 14

  3. Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

    HTML 43 6

  4. Forked from cctsou/DIA-Umpire

    Computational analysis for mass spectrometry-based proteomics data

    12 4

  5. IonQuant Public

    A label free quantification tool.

    8 3

  6. A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

    6 1

Repositories

  • PTM-Shepherd Public

    A tool for summarizing open search results

    Java 5 3 0 0 Updated Jan 24, 2022
  • FragPipe Public

    A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

    Java 62 GPL-3.0 14 35 0 Updated Jan 21, 2022
  • philosopher Public

    A complete toolkit for shotgun proteomics data analysis

    Go 65 GPL-3.0 11 3 0 Updated Jan 14, 2022
  • DIA-Umpire Public

    Computational analysis for mass spectrometry-based proteomics data

    12 9 0 0 Updated Dec 23, 2021
  • IonQuant Public

    A label free quantification tool.

    8 3 1 0 Updated Nov 17, 2021
  • TMT-Integrator Public

    A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

    6 Apache-2.0 1 2 1 Updated Nov 10, 2021
  • MSFragger Public

    Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

    HTML 43 6 7 0 Updated Oct 30, 2021
  • PD-Nodes Public

    The implementation of MSFragger and Philosopher (PeptideProphet) as Proteome Discoverer nodes

    4 Apache-2.0 1 6 0 Updated Aug 26, 2021
  • Crystal-C Public

    Crystal-C: A computational tool for refinement of open search results

    2 Apache-2.0 2 0 0 Updated Jul 23, 2021
  • MSFTBX Public

    MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)

    Java 0 Apache-2.0 4 0 0 Updated Jul 31, 2020

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