runtime error

[prvst]

Discussed in #325

^{Originally posted by XiaofengxBjmu March 9, 2022}
Hello,
I encountered such an error when I used philosoper pipeline to process CPTAC PDA phosphoproteome data, but there was no error when I used the same parameter to process CPTAC CCRCC phosphoproteome.
Looking forward to your reply!

time="11:02:57" level=info msg="Processing 13CPTAC_PDA_P_JHU_20191214_LUMOS_f08"
time="11:03:19" level=info msg="Processing 13CPTAC_PDA_P_JHU_20191214_LUMOS_f09"
time="11:03:40" level=info msg="Processing 13CPTAC_PDA_P_JHU_20191214_LUMOS_f10"
time="11:04:02" level=info msg="Processing 13CPTAC_PDA_P_JHU_20191214_LUMOS_f11"
time="11:04:23" level=info msg="Processing 13CPTAC_PDA_P_JHU_20191214_LUMOS_f12"
time="11:04:45" level=info msg="Assigning intensities to data layers"
time="11:04:45" level=info msg="Executing label-based quantification on 13CPTAC_PDA_Phosphoproteome_JHU_20191214/"
panic: runtime error: index out of range [1] with length 1

goroutine 1 [running]:
philosopher/lib/uti.GetLabelNames(0xc45755, 0xe, 0x0)
/home/prvst/workspace/philosopher/lib/uti/uti.go:107 +0x36e
philosopher/lib/qua.RunIsobaricLabelQuantification(0xc002eee600, 0x7a, 0xc3f7a7, 0x4, 0xc3f70f, 0x4, 0xc0000907e0, 0x69, 0xc00002d7f5, 0x3, ...)
/home/prvst/workspace/philosopher/lib/qua/qua.go:89 +0x1a47
philosopher/lib/pip.LabelQuant(0xc000440000, 0x24, 0xc0000900e0, 0x69, 0xc000440030, 0x29, 0xc000338080, 0x78, 0xc000090150, 0x6f, ...)
/home/prvst/workspace/philosopher/lib/pip/pip.go:596 +0x4ca
philosopher/cmd.glob..func13(0x894f1a0, 0xc00011d830, 0x1, 0x3)
/home/prvst/workspace/philosopher/cmd/pipeline.go:118 +0xa2c
github.com/spf13/cobra.(*Command).execute(0x894f1a0, 0xc00011d7d0, 0x3, 0x3, 0x894f1a0, 0xc00011d7d0)
/home/prvst/go/pkg/mod/github.com/spf13/cobra@v0.0.6/command.go:844 +0x2aa
github.com/spf13/cobra.(*Command).ExecuteC(0x894fc20, 0x0, 0x0, 0x0)
/home/prvst/go/pkg/mod/github.com/spf13/cobra@v0.0.6/command.go:945 +0x317
github.com/spf13/cobra.(*Command).Execute(...)
/home/prvst/go/pkg/mod/github.com/spf13/cobra@v0.0.6/command.go:885
philosopher/cmd.Execute()
/home/

[prvst]

@XiaofengxBjmu Looks like you forgot to assign an annotation file. Do you have one in that folder?

[XiaofengxBjmu]

My annotation file miss a TMT channel, thanks a lot!