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Philosopher 4.8.0, there are proteins having incorrect protein ID, entry name, gene, and protein description #404

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fcyu opened this issue Jan 15, 2023 · 2 comments

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@fcyu
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fcyu commented Jan 15, 2023

See the following screenshot of a psm.tsv as an example
image

The files to reproduce this bug can be downloaded from https://www.dropbox.com/sh/3n0a4m865hv1rjn/AABoDCeBea8RjRbJwXEZfvHda?dl=1

Following is the list of the proteins having incorrect entries in my test dataset

sp|P09651|ROA1_HUMAN has different protein ID: P09651 vs Q32P51
sp|P20700|LMNB1_HUMAN has different protein ID: P20700 vs Q03252
sp|Q9UNX3|RL26L_HUMAN has different protein ID: Q9UNX3 vs P61254
sp|P04406|G3P_HUMAN has different protein ID: O60733 vs P04406
sp|P31946|1433B_HUMAN has different protein ID: P31946 vs P61981
sp|P68032|ACTC_HUMAN has different protein ID: P68133 vs P0CG38
sp|P11142|HSP7C_HUMAN has different protein ID: P54652 vs P11142
sp|Q9NRF8|PYRG2_HUMAN has different protein ID: Q9NRF8 vs P17812
sp|P04406|G3P_HUMAN has different protein ID: O60733 vs O14556
sp|P68104|EF1A1_HUMAN has different protein ID: P68104 vs Q05639
sp|P14866|HNRPL_HUMAN has different protein ID: P14866 vs Q8WVV9
sp|Q9Y383|LC7L2_HUMAN has different protein ID: Q9NQ29 vs Q9Y383
sp|P42704|LPPRC_HUMAN has different protein ID: P42704 vs Q9NP80
sp|P08670|VIME_HUMAN has different protein ID: P08670 vs P14136
sp|P07900|HS90A_HUMAN has different protein ID: P07900 vs P08238
sp|P26599|PTBP1_HUMAN has different protein ID: P26599 vs O95758
sp|Q9UHW9|S12A6_HUMAN has different protein ID: Q9H2X9 vs Q9UHW9
sp|Q99717|SMAD5_HUMAN has different protein ID: Q99717 vs Q15797
sp|P49336|CDK8_HUMAN has different protein ID: Q9BWU1 vs P49336
sp|Q9BWF3|RBM4_HUMAN has different protein ID: Q9BQ04 vs Q9BWF3
sp|P33176|KINH_HUMAN has different protein ID: P33176 vs O60282
sp|P17040|ZSC20_HUMAN has different protein ID: Q9Y6Q3 vs Q6P9G9
sp|P05023|AT1A1_HUMAN has different protein ID: P05023 vs P50993
sp|Q9H0B6|KLC2_HUMAN has different protein ID: Q9H0B6 vs Q07866
sp|P31943|HNRH1_HUMAN has different protein ID: P55795 vs P31943
sp|P11586|C1TC_HUMAN has different protein ID: P11586 vs Q6UB35
sp|P26038|MOES_HUMAN has different protein ID: P26038 vs P35241
sp|P62873|GBB1_HUMAN has different protein ID: P62879 vs P62873
sp|O75820|ZN189_HUMAN has different protein ID: O75820 vs Q5JVG2
sp|P60660|MYL6_HUMAN has different protein ID: P14649 vs P60660
sp|O94776|MTA2_HUMAN has different protein ID: Q9BTC8 vs O94776
sp|P27361|MK03_HUMAN has different protein ID: P27361 vs P28482
sp|P61586|RHOA_HUMAN has different protein ID: P61586 vs P08134
sp|P16104|H2AX_HUMAN has different protein ID: P16104 vs Q93077
sp|P49792|RBP2_HUMAN has different protein ID: O14715 vs P49792
sp|P20339|RAB5A_HUMAN has different protein ID: P20339 vs P51148
sp|Q8TEW0|PARD3_HUMAN has different protein ID: Q8TEW0 vs Q8TEW8
sp|Q8WXI9|P66B_HUMAN has different protein ID: Q86YP4 vs Q8WXI9
sp|Q13283|G3BP1_HUMAN has different protein ID: Q13283 vs Q9UN86
sp|P16989|YBOX3_HUMAN has different protein ID: P16989 vs Q9Y2T7
sp|P08670|VIME_HUMAN has different protein ID: P08670 vs P17661
sp|Q00610|CLH1_HUMAN has different protein ID: Q00610 vs P53675
sp|P22626|ROA2_HUMAN has different protein ID: P22626 vs Q32P51
sp|A8CG34|P121C_HUMAN has different protein ID: A8CG34 vs Q96HA1
sp|P25490|TYY1_HUMAN has different protein ID: P25490 vs O15391
sp|P22392|NDKB_HUMAN has different protein ID: P22392 vs P15531
sp|O75439|MPPB_HUMAN has different protein ID: P31930 vs O75439
sp|Q9BXJ9|NAA15_HUMAN has different protein ID: Q9BXJ9 vs Q6N069
sp|Q9P0L2|MARK1_HUMAN has different protein ID: Q9P0L2 vs P27448
sp|Q5JSL3|DOC11_HUMAN has different protein ID: Q5JSL3 vs Q96BY6
sp|P31483|TIA1_HUMAN has different protein ID: P31483 vs Q01085
sp|Q15365|PCBP1_HUMAN has different protein ID: Q15366 vs Q15365
sp|Q92841|DDX17_HUMAN has different protein ID: P17844 vs Q92841
sp|P63010|AP2B1_HUMAN has different protein ID: P63010 vs Q10567
sp|P68431|H31_HUMAN has different protein ID: Q16695 vs Q71DI3
sp|P98172|EFNB1_HUMAN has different protein ID: P98172 vs Q15768
sp|Q14103|HNRPD_HUMAN has different protein ID: Q14103 vs Q99729
sp|P54646|AAPK2_HUMAN has different protein ID: P54646 vs Q13131
sp|O43491|E41L2_HUMAN has different protein ID: O43491 vs Q9Y2J2
sp|Q96QR8|PURB_HUMAN has different protein ID: Q96QR8 vs Q00577
sp|P16615|AT2A2_HUMAN has different protein ID: O14983 vs P16615
sp|Q05655|KPCD_HUMAN has different protein ID: P05771 vs Q05655
sp|Q7L576|CYFP1_HUMAN has different protein ID: Q96F07 vs Q7L576
sp|Q9NYU2|UGGG1_HUMAN has different protein ID: Q9NYU2 vs Q9NYU1
sp|Q9Y2K7|KDM2A_HUMAN has different protein ID: Q9Y2K7 vs Q9UPP1
sp|P50570|DYN2_HUMAN has different protein ID: Q05193 vs P50570
sp|Q13557|KCC2D_HUMAN has different protein ID: Q13557 vs Q13554
sp|P56545|CTBP2_HUMAN has different protein ID: P56545 vs Q13363
sp|Q9NV96|CC50A_HUMAN has different protein ID: Q9NV96 vs Q3MIR4
sp|O14818|PSA7_HUMAN has different protein ID: Q8TAA3 vs O14818
sp|Q9BYJ9|YTHD1_HUMAN has different protein ID: Q7Z739 vs Q9BYJ9
sp|Q12974|TP4A2_HUMAN has different protein ID: Q93096 vs Q12974
sp|P43034|LIS1_HUMAN has different protein ID: P43034 vs Q9BS26
sp|P14859|PO2F1_HUMAN has different protein ID: Q9UKI9 vs P14859
sp|P12236|ADT3_HUMAN has different protein ID: P12235 vs P12236
sp|P49368|TCPG_HUMAN has different protein ID: P49368 vs Q16878
sp|Q9UNF1|MAGD2_HUMAN has different protein ID: Q9UNF1 vs Q12816
contaminant_INT-STD1 has different protein ID: P02768 vs contaminant_INT-STD1 BSA
sp|Q14839|CHD4_HUMAN has different protein ID: Q14839 vs Q12873
sp|Q9UJU5|FOXD3_HUMAN has different protein ID: Q9UJU5 vs Q12950
sp|Q9P289|STK26_HUMAN has different protein ID: Q9P289 vs Q9Y6E0
sp|Q8N3U4|STAG2_HUMAN has different protein ID: Q8N3U4 vs Q8WVM7
sp|O95239|KIF4A_HUMAN has different protein ID: O95239 vs Q96L93
sp|Q92841|DDX17_HUMAN has different protein ID: P17844 vs O00571
sp|Q9H2M9|RBGPR_HUMAN has different protein ID: O95429 vs Q9H2M9
sp|P07437|TBB5_HUMAN has different protein ID: P07437 vs Q13509
sp|P51812|KS6A3_HUMAN has different protein ID: Q15418 vs P51812
sp|Q8N257|H2B3B_HUMAN has different protein ID: Q99880 vs Q8N257
sp|Q9UL18|AGO1_HUMAN has different protein ID: Q9UL18 vs Q9HCK5
sp|Q9UIW2|PLXA1_HUMAN has different protein ID: Q9UIW2 vs P51805
sp|P49792|RBP2_HUMAN has different protein ID: O14715 vs P0DJD1
sp|P60842|IF4A1_HUMAN has different protein ID: P60842 vs P38919
sp|Q06830|PRDX1_HUMAN has different protein ID: Q06830 vs P32119
sp|P25440|BRD2_HUMAN has different protein ID: P25440 vs O60885
sp|Q14344|GNA13_HUMAN has different protein ID: P30679 vs Q14344
sp|P55347|PKNX1_HUMAN has different protein ID: P55347 vs Q96KN3
sp|Q9NVI7|ATD3A_HUMAN has different protein ID: Q5T2N8 vs Q9NVI7
sp|Q92922|SMRC1_HUMAN has different protein ID: Q8TAQ2 vs Q92922
sp|P23526|SAHH_HUMAN has different protein ID: O43865 vs P23526
sp|P61106|RAB14_HUMAN has different protein ID: Q15771 vs P61106
sp|P08670|VIME_HUMAN has different protein ID: P08670 vs P41219
sp|P35580|MYH10_HUMAN has different protein ID: P35580 vs Q7Z406
sp|Q15424|SAFB1_HUMAN has different protein ID: Q15424 vs Q14151
sp|Q14643|ITPR1_HUMAN has different protein ID: Q14643 vs Q14573
sp|O75487|GPC4_HUMAN has different protein ID: Q96RD6 vs O75487
sp|Q99666|RGPD5_HUMAN has different protein ID: Q99666 vs O14715
sp|P61224|RAP1B_HUMAN has different protein ID: P62834 vs P61224
sp|Q9H936|GHC1_HUMAN has different protein ID: Q9H936 vs Q9H1K4
sp|Q9HCM4|E41L5_HUMAN has different protein ID: Q9H329 vs Q9HCM4
sp|P62937|PPIA_HUMAN has different protein ID: P62937 vs A0A075B759
sp|Q93008|USP9X_HUMAN has different protein ID: Q93008 vs O00507
sp|Q16555|DPYL2_HUMAN has different protein ID: Q14194 vs Q16555
sp|O60885|BRD4_HUMAN has different protein ID: O60885 vs Q15059
sp|P46940|IQGA1_HUMAN has different protein ID: P46940 vs Q86VI3
sp|P25685|DNJB1_HUMAN has different protein ID: P25685 vs Q9UDY4
sp|Q86UP3|ZFHX4_HUMAN has different protein ID: Q86UP3 vs Q9C0A1
sp|Q99733|NP1L4_HUMAN has different protein ID: P55209 vs Q99733
sp|Q9Y462|ZN711_HUMAN has different protein ID: P17010 vs Q9Y462
sp|P00367|DHE3_HUMAN has different protein ID: P49448 vs P00367
sp|O43795|MYO1B_HUMAN has different protein ID: O43795 vs Q9UBC5
sp|P19367|HXK1_HUMAN has different protein ID: P52789 vs P19367
sp|Q15717|ELAV1_HUMAN has different protein ID: Q12926 vs Q15717
sp|P35222|CTNB1_HUMAN has different protein ID: P35222 vs P14923
sp|P51003|PAPOA_HUMAN has different protein ID: P51003 vs Q9BWT3
sp|P26599|PTBP1_HUMAN has different protein ID: P26599 vs Q9UKA9
sp|P39687|AN32A_HUMAN has different protein ID: Q92688 vs P39687
sp|P41229|KDM5C_HUMAN has different protein ID: P41229 vs Q9BY66
sp|Q96IZ6|MET2A_HUMAN has different protein ID: Q6P1Q9 vs Q96IZ6
sp|Q96H55|MYO19_HUMAN has different protein ID: Q96H55 vs A6NCS6
sp|Q99755|PI51A_HUMAN has different protein ID: Q99755 vs O14986
sp|Q04727|TLE4_HUMAN has different protein ID: Q04727 vs Q04724
sp|P35637|FUS_HUMAN has different protein ID: P35637 vs Q92804
sp|P62701|RS4X_HUMAN has different protein ID: Q8TD47 vs P62701
sp|P42695|CNDD3_HUMAN has different protein ID: Q96S52 vs P42695
sp|P30153|2AAA_HUMAN has different protein ID: P30153 vs P30154
sp|P07197|NFM_HUMAN has different protein ID: P07196 vs P07197
sp|Q96N67|DOCK7_HUMAN has different protein ID: Q96N67 vs Q96HP0
sp|Q14119|VEZF1_HUMAN has different protein ID: P56270 vs Q14119
sp|Q9Y678|COPG1_HUMAN has different protein ID: Q9Y678 vs Q9UBF2
sp|Q9UKM9|RALY_HUMAN has different protein ID: Q9UKM9 vs Q86SE5
sp|O95819|M4K4_HUMAN has different protein ID: O95819 vs Q9UKE5
sp|Q9NVA2|SEP11_HUMAN has different protein ID: Q9NVA2 vs Q9P0V9
sp|Q13153|PAK1_HUMAN has different protein ID: Q13177 vs Q13153
sp|P11142|HSP7C_HUMAN has different protein ID: P54652 vs P11021
sp|Q96JJ3|ELMO2_HUMAN has different protein ID: Q96JJ3 vs Q92556
sp|Q9Y376|CAB39_HUMAN has different protein ID: Q9H9S4 vs Q9Y376
sp|P33240|CSTF2_HUMAN has different protein ID: P33240 vs Q9H0L4
sp|Q96A72|MGN2_HUMAN has different protein ID: P61326 vs Q96A72
sp|P68032|ACTC_HUMAN has different protein ID: P68133 vs Q6S8J3
sp|Q9NR30|DDX21_HUMAN has different protein ID: Q9NR30 vs Q9BQ39
sp|P08758|ANXA5_HUMAN has different protein ID: Q8NGA1 vs P08758
sp|P28161|GSTM2_HUMAN has different protein ID: P28161 vs Q03013
sp|Q86TX2|ACOT1_HUMAN has different protein ID: Q86TX2 vs P49753
sp|P61163|ACTZ_HUMAN has different protein ID: P42025 vs P61163
sp|Q9NZI7|UBIP1_HUMAN has different protein ID: Q12800 vs Q9NZI7
sp|P21281|VATB2_HUMAN has different protein ID: P21281 vs P15313
sp|P51692|STA5B_HUMAN has different protein ID: P51692 vs P42229
sp|Q15436|SC23A_HUMAN has different protein ID: Q15436 vs Q15437
sp|P63151|2ABA_HUMAN has different protein ID: P63151 vs Q00005
sp|Q9UJS0|CMC2_HUMAN has different protein ID: Q9UJS0 vs O75746
sp|Q13555|KCC2G_HUMAN has different protein ID: Q13554 vs Q13555
sp|Q92830|KAT2A_HUMAN has different protein ID: Q92830 vs Q92831
sp|P09429|HMGB1_HUMAN has different protein ID: P26583 vs P09429
sp|Q04724|TLE1_HUMAN has different protein ID: Q04724 vs Q04726
sp|Q13620|CUL4B_HUMAN has different protein ID: Q13620 vs Q13619
sp|P11940|PABP1_HUMAN has different protein ID: P11940 vs Q13310
sp|P0DP23|CALM1_HUMAN has different protein ID: P0DP24 vs P02585
sp|Q9NSK0|KLC4_HUMAN has different protein ID: Q07866 vs Q9NSK0
sp|Q8N883|ZN614_HUMAN has different protein ID: Q6ZN57 vs O94892
sp|Q96L73|NSD1_HUMAN has different protein ID: Q96L73 vs Q9BZ95
sp|Q9Y657|SPIN1_HUMAN has different protein ID: Q9Y657 vs Q5JUX0
sp|P11216|PYGB_HUMAN has different protein ID: P11216 vs P11217
sp|Q9H444|CHM4B_HUMAN has different protein ID: Q9H444 vs Q96CF2
sp|Q14161|GIT2_HUMAN has different protein ID: Q9Y2X7 vs Q14161
sp|P24468|COT2_HUMAN has different protein ID: P10588 vs P10589
sp|Q8TDX7|NEK7_HUMAN has different protein ID: Q9HC98 vs Q8TDX7
sp|Q8N5F7|NKAP_HUMAN has different protein ID: Q8N5F7 vs Q5M9Q1
sp|Q14683|SMC1A_HUMAN has different protein ID: Q14683 vs Q8NDV3
sp|P28161|GSTM2_HUMAN has different protein ID: P28161 vs P09488
sp|Q96C19|EFHD2_HUMAN has different protein ID: Q9BUP0 vs Q96C19
sp|P49585|PCY1A_HUMAN has different protein ID: P49585 vs Q9Y5K3
sp|Q9UGU0|TCF20_HUMAN has different protein ID: Q9UGU0 vs Q7Z5J4
sp|Q16799|RTN1_HUMAN has different protein ID: Q16799 vs O95197
sp|Q9Y232|CDYL_HUMAN has different protein ID: Q9Y6F7 vs Q9Y232
sp|Q9BZK7|TBL1R_HUMAN has different protein ID: Q9BZK7 vs O60907
sp|O15357|SHIP2_HUMAN has different protein ID: O15357 vs Q92835
sp|Q9BQ39|DDX50_HUMAN has different protein ID: Q9BQ39 vs P48995
sp|Q9UKB1|FBW1B_HUMAN has different protein ID: Q9UKB1 vs Q9Y297
sp|P35221|CTNA1_HUMAN has different protein ID: P35221 vs P26232
sp|Q9UHW9|S12A6_HUMAN has different protein ID: Q9H2X9 vs Q9UP95
sp|Q9NTW7|ZF64B_HUMAN has different protein ID: Q9NTW7 vs Q9NPA5
sp|P62820|RAB1A_HUMAN has different protein ID: P62820 vs Q9H0U4
sp|O00571|DDX3X_HUMAN has different protein ID: O00571 vs Q9NQI0
sp|Q969V6|MKL1_HUMAN has different protein ID: Q8IZQ8 vs Q969V6
sp|Q96MX3|ZNF48_HUMAN has different protein ID: Q6P3V2 vs Q96MX3
sp|P60520|GBRL2_HUMAN has different protein ID: P60520 vs O95166
sp|Q13242|SRSF9_HUMAN has different protein ID: Q13242 vs O15042
sp|O15350|P73_HUMAN has different protein ID: O15350 vs Q9H3D4
sp|P62140|PP1B_HUMAN has different protein ID: P36873 vs P62140
sp|Q15365|PCBP1_HUMAN has different protein ID: Q15366 vs P57723
sp|Q96GS6|AB17A_HUMAN has different protein ID: Q96GS6 vs Q5VST6
sp|O75525|KHDR3_HUMAN has different protein ID: Q07666 vs O75525
sp|O14950|ML12B_HUMAN has different protein ID: P19105 vs P24844
sp|Q8N883|ZN614_HUMAN has different protein ID: Q6ZN57 vs Q6PF04
sp|O43768|ENSA_HUMAN has different protein ID: O43768 vs P56211
sp|Q13330|MTA1_HUMAN has different protein ID: Q13330 vs Q9BTC8
sp|Q9HCK8|CHD8_HUMAN has different protein ID: Q9HCK8 vs Q9P2D1
sp|P36507|MP2K2_HUMAN has different protein ID: P36507 vs Q02750
sp|Q8WVB6|CTF18_HUMAN has different protein ID: Q8WVB6 vs Q15813
sp|Q9P2E9|RRBP1_HUMAN has different protein ID: Q9P2E9 vs Q8N4C6
sp|P10398|ARAF_HUMAN has different protein ID: P10398 vs P04049
sp|P23634|AT2B4_HUMAN has different protein ID: Q16720 vs P23634
sp|Q04727|TLE4_HUMAN has different protein ID: Q04727 vs Q04726
sp|P16615|AT2A2_HUMAN has different protein ID: O14983 vs Q93084
sp|P14859|PO2F1_HUMAN has different protein ID: Q9UKI9 vs Q06416
sp|O14646|CHD1_HUMAN has different protein ID: O14646 vs O14647
sp|O43314|VIP2_HUMAN has different protein ID: O43314 vs Q6PFW1
sp|Q12926|ELAV2_HUMAN has different protein ID: Q14576 vs Q12926
sp|Q13247|SRSF6_HUMAN has different protein ID: Q08170 vs Q13247
sp|O15066|KIF3B_HUMAN has different protein ID: O14782 vs O15066
sp|Q9UKG1|DP13A_HUMAN has different protein ID: Q9UKG1 vs Q8NEU8
sp|P11908|PRPS2_HUMAN has different protein ID: P60891 vs P11908
sp|Q96A47|ISL2_HUMAN has different protein ID: P61371 vs Q96A47
sp|Q92794|KAT6A_HUMAN has different protein ID: Q8WYB5 vs Q92794
sp|Q96GK7|FAH2A_HUMAN has different protein ID: Q6P2I3 vs Q96GK7
sp|Q9BVJ6|UT14A_HUMAN has different protein ID: Q9BVJ6 vs Q5TAP6
sp|Q9UPN3|MACF1_HUMAN has different protein ID: Q9UPN3 vs Q03001
sp|Q92769|HDAC2_HUMAN has different protein ID: Q13547 vs Q92769
sp|P32189|GLPK_HUMAN has different protein ID: Q14410 vs P32189
sp|Q00341|VIGLN_HUMAN has different protein ID: Q00341 vs Q9BXX2
sp|P13797|PLST_HUMAN has different protein ID: P13797 vs P13796
sp|Q8IWY8|ZSC29_HUMAN has different protein ID: Q6ZMW2 vs Q8IWY8
sp|P43250|GRK6_HUMAN has different protein ID: P43250 vs P32298
sp|Q9Y4J8|DTNA_HUMAN has different protein ID: Q9Y4J8 vs O60941
sp|O94964|SOGA1_HUMAN has different protein ID: O94964 vs Q9Y4B5
sp|Q5U5Q3|MEX3C_HUMAN has different protein ID: Q5U5Q3 vs Q86XN8
sp|P78332|RBM6_HUMAN has different protein ID: P78332 vs P98175
sp|Q96P47|AGAP3_HUMAN has different protein ID: Q96P47 vs Q9UPQ3
sp|Q9ULV4|COR1C_HUMAN has different protein ID: Q9ULV4 vs Q6QEF8
sp|Q9P289|STK26_HUMAN has different protein ID: Q9P289 vs O00506
sp|Q7Z2W4|ZCCHV_HUMAN has different protein ID: Q7Z2W4 vs Q9H0J9
sp|P14373|TRI27_HUMAN has different protein ID: P14373 vs Q9HCM9
sp|Q9BQE9|BCL7B_HUMAN has different protein ID: Q4VC05 vs Q9BQE9
sp|Q5T9A4|ATD3B_HUMAN has different protein ID: Q5T9A4 vs Q5T2N8
sp|P98175|RBM10_HUMAN has different protein ID: P98175 vs P52756
sp|O95298|NDUC2_HUMAN has different protein ID: E9PQ53 vs O95298
sp|Q6PL18|ATAD2_HUMAN has different protein ID: Q6PL18 vs Q9ULI0
sp|Q9P265|DIP2B_HUMAN has different protein ID: Q9P265 vs Q14689
sp|Q9NUP9|LIN7C_HUMAN has different protein ID: Q9NUP9 vs O14910
sp|O75369|FLNB_HUMAN has different protein ID: O75369 vs Q14315
sp|Q8IYS1|P20D2_HUMAN has different protein ID: Q8IYS1 vs Q5T9S5
sp|Q92783|STAM1_HUMAN has different protein ID: Q92783 vs O75886
sp|Q8IWZ3|ANKH1_HUMAN has different protein ID: Q8IWZ3 vs O75179
sp|O95104|SFR15_HUMAN has different protein ID: O95104 vs Q9UPN6
sp|Q9Y692|GMEB1_HUMAN has different protein ID: Q9Y692 vs Q32M84
sp|Q9UQN3|CHM2B_HUMAN has different protein ID: Q9UQN3 vs Q92828
sp|Q9NZW5|MPP6_HUMAN has different protein ID: Q9NZW5 vs Q14168
sp|Q9NRK6|ABCBA_HUMAN has different protein ID: Q9NUT2 vs Q9NRK6
sp|O60216|RAD21_HUMAN has different protein ID: O60216 vs Q9H4I0
sp|Q5TF21|SOGA3_HUMAN has different protein ID: Q5TF21 vs Q9Y4B5
sp|P63027|VAMP2_HUMAN has different protein ID: P63027 vs Q15836
sp|Q9Y4I1|MYO5A_HUMAN has different protein ID: Q9Y4I1 vs Q9ULV0
sp|Q14839|CHD4_HUMAN has different protein ID: Q14839 vs Q8TDI0
sp|Q66K14|TBC9B_HUMAN has different protein ID: Q66K14 vs Q6ZT07
sp|P09493|TPM1_HUMAN has different protein ID: P06753 vs P07951
sp|P01023|A2MG_HUMAN has different protein ID: P01023 vs P20742
sp|Q13615|MTMR3_HUMAN has different protein ID: Q13615 vs Q9NYA4
sp|P14618|KPYM_HUMAN has different protein ID: P14618 vs P30613
sp|Q9HC52|CBX8_HUMAN has different protein ID: Q9HC52 vs O95503
sp|Q9H4W6|COE3_HUMAN has different protein ID: Q9H4W6 vs Q9HAK2
sp|Q8NFP7|NUD10_HUMAN has different protein ID: Q9NZJ9 vs Q8NFP7
sp|P35580|MYH10_HUMAN has different protein ID: P35580 vs P35749
sp|Q86UW7|CAPS2_HUMAN has different protein ID: Q9ULU8 vs Q86UW7
sp|Q9NYV4|CDK12_HUMAN has different protein ID: Q9NYV4 vs Q14004
sp|Q01105|SET_HUMAN has different protein ID: Q01105 vs P0DME0
sp|O60481|ZIC3_HUMAN has different protein ID: Q15915 vs Q8N9L1
sp|P63000|RAC1_HUMAN has different protein ID: P60763 vs P63000
sp|P09493|TPM1_HUMAN has different protein ID: P06753 vs P09493
sp|Q96IK1|BOD1_HUMAN has different protein ID: Q96IK1 vs Q8IYS8
sp|O95251|KAT7_HUMAN has different protein ID: O95251 vs Q8WYB5
sp|Q05BQ5|MBTD1_HUMAN has different protein ID: Q05BQ5 vs Q969R5
sp|P62820|RAB1A_HUMAN has different protein ID: P62820 vs P59190
sp|P48735|IDHP_HUMAN has different protein ID: P48735 vs O75874
sp|P05549|AP2A_HUMAN has different protein ID: P05549 vs Q6VUC0
sp|P04632|CPNS1_HUMAN has different protein ID: P04632 vs Q96L46
sp|P21675|TAF1_HUMAN has different protein ID: Q8IZX4 vs P21675
sp|Q8NG27|PJA1_HUMAN has different protein ID: Q8NG27 vs O43164
sp|Q13625|ASPP2_HUMAN has different protein ID: Q13625 vs Q96KQ4
sp|P63151|2ABA_HUMAN has different protein ID: P63151 vs Q66LE6
sp|P54760|EPHB4_HUMAN has different protein ID: P54760 vs P54753
sp|Q9ULJ6|ZMIZ1_HUMAN has different protein ID: Q9ULJ6 vs Q8NF64
sp|Q7RTP6|MICA3_HUMAN has different protein ID: Q7RTP6 vs O94851
sp|P07900|HS90A_HUMAN has different protein ID: P07900 vs Q12931
sp|P46926|GNPI1_HUMAN has different protein ID: Q8TDQ7 vs P46926
sp|Q96N67|DOCK7_HUMAN has different protein ID: Q96N67 vs Q8NF50
sp|Q8TEU7|RPGF6_HUMAN has different protein ID: Q8TEU7 vs Q9Y4G8
sp|Q13085|ACACA_HUMAN has different protein ID: Q13085 vs O00763
sp|O00410|IPO5_HUMAN has different protein ID: O00410 vs O60518
sp|O00505|IMA4_HUMAN has different protein ID: O00505 vs O00629
sp|P24941|CDK2_HUMAN has different protein ID: P24941 vs Q00526
sp|P18846|ATF1_HUMAN has different protein ID: P16220 vs P18846
sp|P29401|TKT_HUMAN has different protein ID: P29401 vs Q9H0I9
sp|Q9BQE3|TBA1C_HUMAN has different protein ID: Q9BQE3 vs Q71U36
sp|P51153|RAB13_HUMAN has different protein ID: P61026 vs P51153
sp|O43639|NCK2_HUMAN has different protein ID: O43639 vs P16333
sp|Q96S59|RANB9_HUMAN has different protein ID: Q96S59 vs Q6VN20
sp|Q6NSJ5|LRC8E_HUMAN has different protein ID: Q8TDW0 vs Q6NSJ5
sp|P24468|COT2_HUMAN has different protein ID: P10588 vs P24468
sp|P37235|HPCL1_HUMAN has different protein ID: P37235 vs P61601
sp|Q13907|IDI1_HUMAN has different protein ID: Q9BXS1 vs Q13907
sp|P62258|1433E_HUMAN has different protein ID: P62258 vs P61981
sp|Q8N883|ZN614_HUMAN has different protein ID: Q6ZN57 vs Q8N883
sp|Q04917|1433F_HUMAN has different protein ID: Q04917 vs P61981
sp|P04264|K2C1_HUMAN has different protein ID: P04264 vs P05787
sp|Q9UJC3|HOOK1_HUMAN has different protein ID: Q9UJC3 vs Q86VS8
sp|P68036|UB2L3_HUMAN has different protein ID: P68036 vs P61129
sp|Q96SI1|KCD15_HUMAN has different protein ID: Q96SI1 vs Q719H9
sp|P09429|HMGB1_HUMAN has different protein ID: P26583 vs P23497
sp|Q99613|EIF3C_HUMAN has different protein ID: Q99613 vs Q8ND83
sp|Q01974|ROR2_HUMAN has different protein ID: Q01974 vs Q01973
sp|Q9NVI7|ATD3A_HUMAN has different protein ID: Q5T2N8 vs Q5T9A4
sp|Q15233|NONO_HUMAN has different protein ID: Q15233 vs Q8WXF1
sp|P50851|LRBA_HUMAN has different protein ID: P50851 vs Q8NFP9
sp|P11234|RALB_HUMAN has different protein ID: P11234 vs P11233
sp|P41227|NAA10_HUMAN has different protein ID: P41227 vs Q9BSU3
sp|O00291|HIP1_HUMAN has different protein ID: O00291 vs O75146
sp|Q96CP2|FWCH2_HUMAN has different protein ID: Q96CP2 vs Q4VC44
sp|Q9H7D7|WDR26_HUMAN has different protein ID: Q9H7D7 vs Q96MK3
sp|Q14320|FA50A_HUMAN has different protein ID: Q14320 vs A6NGH7
sp|Q9H2U1|DHX36_HUMAN has different protein ID: Q9H2U1 vs Q5TCY1
sp|Q9Y3L5|RAP2C_HUMAN has different protein ID: Q9Y3L5 vs P61225
sp|Q9UPW6|SATB2_HUMAN has different protein ID: Q9UPW6 vs Q01826
sp|Q12965|MYO1E_HUMAN has different protein ID: Q12965 vs O00160
sp|P01112|RASH_HUMAN has different protein ID: P01112 vs P01111
sp|P78356|PI42B_HUMAN has different protein ID: P78356 vs P48426
sp|P55854|SUMO3_HUMAN has different protein ID: P55854 vs Q6EEV6
sp|P46063|RECQ1_HUMAN has different protein ID: P46063 vs P54132
sp|Q8TDD1|DDX54_HUMAN has different protein ID: Q8TDD1 vs Q9Y2R4
sp|Q9Y6M4|KC1G3_HUMAN has different protein ID: Q9Y6M4 vs Q9HCP0
sp|O15305|PMM2_HUMAN has different protein ID: O15305 vs Q92871
sp|P49757|NUMB_HUMAN has different protein ID: P49757 vs Q9Y6R0
sp|Q96JP5|ZFP91_HUMAN has different protein ID: Q96JP5 vs Q96CK0
sp|Q4VCS5|AMOT_HUMAN has different protein ID: Q4VCS5 vs Q8IY63
sp|P04264|K2C1_HUMAN has different protein ID: P04264 vs Q7Z794
sp|Q13043|STK4_HUMAN has different protein ID: Q13043 vs Q13188
sp|Q07955|SRSF1_HUMAN has different protein ID: Q07955 vs Q13242
sp|P23258|TBG1_HUMAN has different protein ID: Q9NRH3 vs P23258
sp|Q9H4M9|EHD1_HUMAN has different protein ID: Q9H4M9 vs Q9NZN4
sp|Q6STE5|SMRD3_HUMAN has different protein ID: Q6STE5 vs Q92925
sp|O75449|KTNA1_HUMAN has different protein ID: O75449 vs Q9BW62
sp|P55072|TERA_HUMAN has different protein ID: P55072 vs Q8IYT4
sp|Q8TD16|BICD2_HUMAN has different protein ID: Q8TD16 vs Q96G01
sp|Q9Y5S2|MRCKB_HUMAN has different protein ID: Q9Y5S2 vs Q09013
sp|Q9H999|PANK3_HUMAN has different protein ID: Q9H999 vs Q9BZ23
sp|P27361|MK03_HUMAN has different protein ID: P27361 vs P16234
sp|Q86UL3|GPAT4_HUMAN has different protein ID: Q86UL3 vs Q53EU6
sp|P18433|PTPRA_HUMAN has different protein ID: P23469 vs P18433
sp|P11802|CDK4_HUMAN has different protein ID: P11802 vs P51451
sp|P58335|ANTR2_HUMAN has different protein ID: P58335 vs Q9H6X2
sp|Q8N1G0|ZN687_HUMAN has different protein ID: Q8N1G0 vs Q9HCE3
sp|O00459|P85B_HUMAN has different protein ID: O00459 vs Q92569
sp|Q6NSJ5|LRC8E_HUMAN has different protein ID: Q8TDW0 vs Q8IWT6
sp|Q96K83|ZN521_HUMAN has different protein ID: Q96K83 vs Q2M1K9
sp|P27986|P85A_HUMAN has different protein ID: P27986 vs Q92569
sp|Q9NQB0|TF7L2_HUMAN has different protein ID: Q9NQB0 vs P36402
sp|Q6NUN9|ZN746_HUMAN has different protein ID: Q6NUN9 vs Q6ZMS7
sp|Q8IWJ2|GCC2_HUMAN has different protein ID: Q8IWJ2 vs Q8WUA4
sp|Q9HBM6|TAF9B_HUMAN has different protein ID: Q16594 vs Q9HBM6
sp|P27361|MK03_HUMAN has different protein ID: P27361 vs Q96KX1
sp|O15516|CLOCK_HUMAN has different protein ID: O15516 vs Q99743
sp|Q5U5Q3|MEX3C_HUMAN has different protein ID: Q5U5Q3 vs A1L020
sp|Q16222|UAP1_HUMAN has different protein ID: Q16222 vs Q3KQV9
sp|P12277|KCRB_HUMAN has different protein ID: P12277 vs P06732
sp|Q9HAC8|UBTD1_HUMAN has different protein ID: Q9HAC8 vs Q8WUN7
sp|Q15375|EPHA7_HUMAN has different protein ID: Q15375 vs P54756
sp|Q9NUQ9|FA49B_HUMAN has different protein ID: Q9NUQ9 vs Q9H0Q0
sp|Q92782|DPF1_HUMAN has different protein ID: Q92784 vs Q92782
sp|P04350|TBB4A_HUMAN has different protein ID: P04350 vs Q13509
sp|Q9Y6E2|BZW2_HUMAN has different protein ID: Q9Y6E2 vs Q7L1Q6
sp|O15021|MAST4_HUMAN has different protein ID: Q86UE8 vs O15021
sp|Q6GQQ9|OTU7B_HUMAN has different protein ID: Q6GQQ9 vs Q8TE49
sp|O15320|CTGE5_HUMAN has different protein ID: O15320 vs P0CG41
sp|Q8WXE0|CSKI2_HUMAN has different protein ID: Q8WXE0 vs Q8WXD9
sp|Q86YS6|RAB43_HUMAN has different protein ID: Q86YS6 vs Q15771
sp|Q96EI5|TCAL4_HUMAN has different protein ID: Q96EI5 vs Q9H3H9
sp|Q7Z5Q1|CPEB2_HUMAN has different protein ID: Q8NE35 vs Q7Z5Q1
sp|P68363|TBA1B_HUMAN has different protein ID: Q71U36 vs P68363
sp|P20265|PO3F2_HUMAN has different protein ID: Q03052 vs P20265
sp|Q5THJ4|VP13D_HUMAN has different protein ID: Q5THJ4 vs Q7L211
sp|P13637|AT1A3_HUMAN has different protein ID: P13637 vs Q13733
sp|P84103|SRSF3_HUMAN has different protein ID: P84103 vs Q16629

Best,

Fengchao

@fcyu fcyu changed the title Philosopher 4.8.0, there are proteins have incorrect protein ID, entry name, gene, and protein description Philosopher 4.8.0, there are proteins having incorrect protein ID, entry name, gene, and protein description Jan 15, 2023
@prvst
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prvst commented Jan 16, 2023

Fixed. Added to v4.8.1

@fcyu
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fcyu commented Jan 16, 2023

Thanks. This bug seems to be fixed, but I found another bug. I will create a new issue shortly,

Best,

Fengchao

@fcyu fcyu closed this as completed Jan 16, 2023
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