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Accelerate mz3 #1

Merged
merged 1 commit into from Apr 24, 2022
Merged

Accelerate mz3 #1

merged 1 commit into from Apr 24, 2022

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neurolabusc
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@fangq your Python demo is very elegant. I have updated the original Python code to leverage numpy's faster reading methods. The dramatically accelerates this format on my M1 laptop.

Original Python (ms):

gz.mz3	438.94124031066895
raw.mz3	215.3019905090332

NumPy (ms):

gz.mz3	230.32212257385254
raw.mz3	5.419015884399414

@fangq
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fangq commented Apr 24, 2022

merged. I see a similar improvement on my AMD processor.

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