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Examples of integration between PyNN and NeuroML2 are being added to: https://github.com/OpenSourceBrain/PyNNShowcase
In progress here: https://github.com/pgleeson/PyNN/tree/master/pyNN/neuroml (recent version has been merged into PyNN master: NeuralEnsemble/PyNN#509). There is example of a PyNN file converted to NeuroML2 on https://github.com/OpenSourceBrain/PyNNShowcase (latest export is here)
Longer term:
Started here: https://github.com/NeuroML/org.neuroml.export/blob/development/src/main/java/org/neuroml/export/pynn/PyNNWriter.java.
Initially only worked for models only using NML2 equivalents of PyNN cells, e.g. https://github.com/NeuroML/NeuroML2/blob/development/examples/NML2_PyNNCells.nml. Now using tips here and here to make sure this jNeuroML generated code is compatible with PyNN.
Similar to above, but use statement like:
cell_type, cell_instance = import_neuroml2_cell(file="MyNeuroML.nml",cell_id = "mycell")
inside existing PyNN script. Note something similar to this is possible in NetPyNE already, see here.
The text was updated successfully, but these errors were encountered:
Much improved PyNNWriter
4745f4c
Work towards NeuroML/NeuroML2#73
pgleeson
No branches or pull requests
Examples of integration between PyNN and NeuroML2 are being added to: https://github.com/OpenSourceBrain/PyNNShowcase
Scenario: Model in PyNN; convert it equivalent in NeuroML2
In progress here: https://github.com/pgleeson/PyNN/tree/master/pyNN/neuroml (recent version has been merged into PyNN master: NeuralEnsemble/PyNN#509). There is example of a PyNN file converted to NeuroML2 on https://github.com/OpenSourceBrain/PyNNShowcase (latest export is here)
Longer term:
Scenario: Network model in NeuroML 2; need to convert it to equivalent in PyNN using jNeuroML
Started here: https://github.com/NeuroML/org.neuroml.export/blob/development/src/main/java/org/neuroml/export/pynn/PyNNWriter.java.
Initially only worked for models only using NML2 equivalents of PyNN cells, e.g. https://github.com/NeuroML/NeuroML2/blob/development/examples/NML2_PyNNCells.nml. Now using tips here and here to make sure this jNeuroML generated code is compatible with PyNN.
Scenario: Cell model in NeuroML 2/LEMS; need to use it in PyNN script as a cell for Population
Similar to above, but use statement like:
inside existing PyNN script. Note something similar to this is possible in NetPyNE already, see here.
The text was updated successfully, but these errors were encountered: