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add optinist (#111)
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* add optinist

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Co-authored-by: Oliver Ruebel <oruebel@users.noreply.github.com>
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bendichter and oruebel committed Jul 18, 2023
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18 changes: 18 additions & 0 deletions docs/source/tools/analysis_tools_home.rst
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Expand Up @@ -22,6 +22,7 @@ Analysis and Visualization Tools
ciatah/ciatah
extract/extract
cicada/cicada
optinist/optinist
patchview/patchview
deeplabcut/deeplabcut
sleap/sleap
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.. raw:: html

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.. image:: optinist/optinist.png
:class: align-left
:width: 180

.. include:: optinist/optinist.rst
:start-after: .. short_description_start
:end-before: .. short_description_end

.. raw:: html

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14 changes: 14 additions & 0 deletions docs/source/tools/optinist/optinist.rst
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.. _analysistools-optinist:

OptiNiSt
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.. short_description_start
:ref:`analysistools-optinist` (Optical Neuroimage Studio) is a GUI based workflow pipeline tools for processing two-photon calcium imaging data. :bdg-link-primary:`Source <https://github.com/oist/optinist/>` :bdg-link-primary:`Docs <https://optinist.readthedocs.io/en/latest/>`

.. short_description_end
OptiNiSt helps researchers try multiple data analysis methods, visualize the results, and construct the data analysis pipelines easily and quickly on GUI. OptiNiSt's data-saving format follows NWB standards.

OptiNiSt also supports reproducibility of scientific research, standardization of analysis protocols, and developments of novel analysis tools as plug-in.

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