Merge pull request #108 from NeurodataWithoutBorders/add/ibl_brainmap…

…_tutorial Add IBL Brainmap tutorial to the community gallery
NeurodataWithoutBorders · Jul 18, 2023 · 94304a9 · 94304a9
2 parents 655d345 + ad4168a
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diff --git a/README.rst b/README.rst
@@ -99,6 +99,7 @@ To contribute a new project to the community gallery, please create a pull reque
 
     * Figure should be added to the folder ``docs/source/community_gallery/figures``
     * If you design the figure in PowerPoint then please add the source slide to the ``docs/source/community_gallery/figures/figure_icons_source.pptx`` file
+    * External links are typically defined as roles in the ``docs/source/conf_extlinks.py``
 
 **Step 2:** Build the docs and and review your changes via
 

diff --git a/docs/source/community_gallery/community_gallery.rst b/docs/source/community_gallery/community_gallery.rst
@@ -49,6 +49,22 @@ Data Analysis and Reuse
 
 The :openscope-databook:`OpenScope Databook <>` provides scripts and documentation used for brain data analysis and visualization, primarily working with NWB files and the :ref:`analysistools-dandi` archive. Through :jupyter-book:`Jupyter Book <>`, this code is structured as a series of notebooks intended to explain and educate users on how to work with brain data. This resource is provided by the Allen Institute’s :openscope-project:`OpenScope Project <>`, an endeavor of The Allen Institute :mindscope-program:`Mindscope Program <>`. OpenScope is a platform for high-throughput and reproducible neurophysiology open to external scientists to test theories of brain function.
 
+.. raw:: html
+
+    <br/>
+
+.. image:: figures/ibl_brainmap.png
+    :class: align-left, no-scaled-link
+    :width: 100
+
+
+The :ibl-website:`International Brain Laboratory (IBL) <>` released a Brainwide Map of neural activity during decision-making, consisting of 547 Neuropixel recordings of 32,784 neurons across 194 regions of the mouse brain. At Cosyne 2023, the IBL team presented an `Introduction to IBL and the Brain-wide map dataset <https://colab.research.google.com/drive/1Ua-NlpYYZCIOF56xbsT9YR71Enkotd-b>`_ and tutorials on `Using IBL data with NWB <https://colab.research.google.com/drive/1zr6lP_zzRgPZuHs3nB5oGnFtPKrduQ3L>`_  and `Using IBL data with ONE <https://colab.research.google.com/drive/1y3sRI1wC7qbWqN6skvulzPOp6xw8tLm7>`_.
+
+
+.. raw:: html
+
+    <br/>
+
 
 .. note::
 

diff --git a/docs/source/community_gallery/figures/figure_icons_source.pptx b/docs/source/community_gallery/figures/figure_icons_source.pptx
diff --git a/docs/source/community_gallery/figures/ibl_brainmap.png b/docs/source/community_gallery/figures/ibl_brainmap.png
diff --git a/docs/source/conf_extlinks.py b/docs/source/conf_extlinks.py
@@ -51,6 +51,7 @@
     'datajoint-elements': ('https://www.datajoint.com/elements/%s', '%s'),
     'openscope-databook': ('https://alleninstitute.github.io/openscope_databook/%s', '%s'),
     'openscope-project': ('https://alleninstitute.org/what-we-do/brain-science/research/mindscope-program/openscope/%s', '%s'),
+    'ibl-website': ('https://www.internationalbrainlab.com/%s', '%s'),
     'mindscope-program': ('https://alleninstitute.org/what-we-do/brain-science/research/mindscope-program/%s', '%s'),
     'jupyter-book': ('https://jupyterbook.org/en/stable/%s', '%s'),
 }