Figure names were adjusted.

Neuropharmacol · Oct 13, 2021 · f755785 · f755785
1 parent 7bebc92
commit f755785
Show file tree

Hide file tree

Showing 4 changed files with 12 additions and 15 deletions.
diff --git a/dt_figs/Figure2_estimated_params.png → dt_figs/Fig5_estimated_params.png b/dt_figs/Figure2_estimated_params.png → dt_figs/Fig5_estimated_params.png
diff --git a/dt_figs/Fig1_methodology.tiff → dt_figs/Fig8_methodology.tiff b/dt_figs/Fig1_methodology.tiff → dt_figs/Fig8_methodology.tiff
diff --git a/dt_figs/S_Fig1_champions.tiff → dt_figs/S_Fig1_individual_fitting.tiff b/dt_figs/S_Fig1_champions.tiff → dt_figs/S_Fig1_individual_fitting.tiff
diff --git a/src/main_q_learning_sampling_results.ipynb b/src/main_q_learning_sampling_results.ipynb
@@ -4,7 +4,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# 1_q-learning_sampling.ipynb\n",
+    "# Title(Should be replaced.)\n",
     "This notebook is prepared for reproduction of q-learning results."
    ]
   },
@@ -24,19 +24,16 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Collecting contextplt==0.1.6\n",
-      "  Downloading contextplt-0.1.6-py3-none-any.whl (3.8 kB)\n",
+      "Requirement already satisfied: contextplt==0.1.6 in /opt/conda/lib/python3.8/site-packages (0.1.6)\n",
       "Requirement already satisfied: matplotlib in /opt/conda/lib/python3.8/site-packages (from contextplt==0.1.6) (3.3.2)\n",
-      "Requirement already satisfied: pillow>=6.2.0 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (8.0.1)\n",
+      "Requirement already satisfied: numpy>=1.15 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (1.19.2)\n",
+      "Requirement already satisfied: cycler>=0.10 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (0.10.0)\n",
+      "Requirement already satisfied: python-dateutil>=2.1 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (2.8.1)\n",
       "Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (2.4.7)\n",
       "Requirement already satisfied: kiwisolver>=1.0.1 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (1.3.0)\n",
+      "Requirement already satisfied: pillow>=6.2.0 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (8.0.1)\n",
       "Requirement already satisfied: certifi>=2020.06.20 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (2020.6.20)\n",
-      "Requirement already satisfied: cycler>=0.10 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (0.10.0)\n",
-      "Requirement already satisfied: numpy>=1.15 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (1.19.2)\n",
-      "Requirement already satisfied: python-dateutil>=2.1 in /opt/conda/lib/python3.8/site-packages (from matplotlib->contextplt==0.1.6) (2.8.1)\n",
-      "Requirement already satisfied: six in /opt/conda/lib/python3.8/site-packages (from cycler>=0.10->matplotlib->contextplt==0.1.6) (1.15.0)\n",
-      "Installing collected packages: contextplt\n",
-      "Successfully installed contextplt-0.1.6\n"
+      "Requirement already satisfied: six in /opt/conda/lib/python3.8/site-packages (from cycler>=0.10->matplotlib->contextplt==0.1.6) (1.15.0)\n"
      ]
     }
    ],
@@ -730,7 +727,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Figure ?. Simulated distributions from estimated parameters."
+    "# Figure 5. Simulated distributions from estimated parameters."
    ]
   },
   {
@@ -849,7 +846,7 @@
     "patches = visTools.create_patch_for_label(label_names = label_names, line=True)\n",
     "\n",
     "with cplt.Multiple(figsize=(9,6),grid=(2,2),dpi=300, label_outer=True, \n",
-    "                   save_path = \"../dt_figs/Figure2_estimated_params.png\",\n",
+    "                   save_path = \"../dt_figs/Fig5_estimated_params.png\",\n",
     "                   savefig_kargs = dict(facecolor=\"white\"),\n",
     "                   tight=True \n",
     "                  ) as p:\n",
@@ -1342,7 +1339,7 @@
     "#sns.set(context=\"paper\" , style =\"whitegrid\",rc={\"figure.facecolor\":\"white\"})\n",
     "\n",
     "with cplt.Multiple(figsize=(9,6),grid=(2,2),dpi=300, \n",
-    "                  save_path = \"../dt_figs/S_Fig1_champions.tiff\",\n",
+    "                  save_path = \"../dt_figs/S_Fig1_individual_fitting.tiff\",\n",
     "                  savefig_kargs = dict(facecolor=\"white\",pil_kwargs={\"compression\": \"tiff_lzw\"}), \n",
     "                  ) as p:\n",
     "    for i, (label, sub) in enumerate(champions.items()):\n",
@@ -1376,7 +1373,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Figure ??. Methodology"
+    "# Figure 8. Methodology"
    ]
   },
   {
@@ -1428,7 +1425,7 @@
     "ax.tick_params(axis='both', which='major', labelsize=12)\n",
     "lgd = plt.legend(title=\"Functions\", fontsize=11)\n",
     "lgd.get_title().set_fontsize('11') \n",
-    "plt.savefig(\"../dt_figs/Fig1_methodology.tiff\", facecolor=\"white\", pil_kwargs={\"compression\": \"tiff_lzw\"})"
+    "plt.savefig(\"../dt_figs/Fig8_methodology.tiff\", facecolor=\"white\", pil_kwargs={\"compression\": \"tiff_lzw\"})"
    ]
   },
   {